Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

57645588 .. 57646572

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAACGAAGAGAACTAGAGTTCATCAGTTTGTTAAATATTGTAGGCCTTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGGACTGTGGGTGTCCCCTTGACAACTATTGAAGCACGGCTTGAGTCGGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCGAGCAGATCTCACTGAAGAAGTCCTTATTGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAGTGCCCCCTTGTCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGAGAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACATGAAGGCAAGAAAATACATTTTGGATGAGCTCAATAATATGGGTCAGAAACAGCGAGTATGTGCTCCATCCCTGTTTCATGCTATGTTGCTCAAGTTTATTCATCTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

223

Amino Acids

25.14

Weight (kDa)

6.09

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	10 - 80	6.9e-08	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	279
AcvI	CACGTG	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
AgsI	TTSAA	2 cut(s)	137, 398
AluBI	AGCT	4 cut(s)	60, 453, 515, 589
AluI	AGCT	4 cut(s)	60, 453, 515, 589
Alw21I	GWGCWC	2 cut(s)	591, 625
Alw26I	GTCTC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	46, 495
ApeKI	GCWGC	2 cut(s)	310, 512
Asp700I	GAANNNNTTC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	305, 383
AvaII	GGWCC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	591
BbrPI	CACGTG	1 cut(s)	194
Bbv12I	GWGCWC	2 cut(s)	591, 625
BbvI	GCAGC	2 cut(s)	322, 524
BccI	CCATC	2 cut(s)	269, 634
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	17, 183
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	2 cut(s)	311, 513
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	2 cut(s)	312, 514
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	156, 284
BmrI	ACTGGG	2 cut(s)	173, 517
BmsI	GCATC	2 cut(s)	163, 529
BmuI	ACTGGG	2 cut(s)	173, 517
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	167, 351, 635
Bsa29I	ATCGAT	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 163, 164
Bse1I	ACTGG	2 cut(s)	168, 512
Bse3DI	GCAATG	2 cut(s)	94, 330
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	2 cut(s)	589, 626
BseLI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
BseMI	GCAATG	2 cut(s)	94, 330
BseMII	CTCAG	2 cut(s)	477, 507
BseNI	ACTGG	2 cut(s)	168, 512
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	322, 524
BshFI	GGCC	2 cut(s)	48, 497
BshVI	ATCGAT	1 cut(s)	431
BsiHKAI	GWGCWC	2 cut(s)	591, 625
BslFI	GGGAC	3 cut(s)	104, 121, 140
BslI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	3 cut(s)	104, 121, 140
BsnI	GGCC	2 cut(s)	48, 497
Bsp1286I	GDGCHC	3 cut(s)	419, 591, 625
Bsp143I	GATC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	516
BspANI	GGCC	2 cut(s)	48, 497
BspCNI	CTCAG	2 cut(s)	478, 508
BspDI	ATCGAT	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	156, 284
BsrDI	GCAATG	2 cut(s)	94, 330
BsrI	ACTGG	2 cut(s)	168, 512
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	112, 363
Bst6I	CTCTTC	1 cut(s)	4
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	209, 486, 516
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	589, 626
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 399
BstPI	GGTNACC	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	322, 524
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	48, 497
BsuTUI	ATCGAT	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	589, 626
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	255, 419
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	431
CviAII	CATG	2 cut(s)	559, 638
CviJI	RGCY	9 cut(s)	48, 60, 69, 145, 313, 453, 497, 515, 589
CviKI_1	RGCY	9 cut(s)	48, 60, 69, 145, 313, 453, 497, 515, 589
DdeI	CTNAG	3 cut(s)	209, 486, 516
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DraI	TTTAAA	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	498
Eco147I	AGGCCT	2 cut(s)	48, 497
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	279
Eco72I	CACGTG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	2 cut(s)	562, 641
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 252, 284
FaqI	GGGAC	3 cut(s)	104, 121, 140
FatI	CATG	2 cut(s)	558, 637
Fnu4HI	GCNGC	2 cut(s)	311, 513
FokI	GGATG	2 cut(s)	596, 613
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	311, 513
FspBI	CTAG	2 cut(s)	17, 183
GluI	GCNGC	2 cut(s)	311, 513
HaeIII	GGCC	2 cut(s)	48, 497
Hin1II	CATG	2 cut(s)	562, 641
HinfI	GANTC	2 cut(s)	149, 458
HphI	GGTGA	2 cut(s)	305, 383
Hpy188I	TCNGA	2 cut(s)	606, 666
Hpy188III	TCNNGA	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	2 cut(s)	112, 363
HpyCH4IV	ACGT	2 cut(s)	77, 193
HpyCH4V	TGCA	2 cut(s)	176, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 399
HpyF3I	CTNAG	3 cut(s)	209, 486, 516
HpySE526I	ACGT	2 cut(s)	77, 193
Hsp92II	CATG	2 cut(s)	562, 641
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	320, 628
LpnPI	CCDG	8 cut(s)	149, 171, 216, 276, 325, 493, 498, 644
Lsp1109I	GCAGC	2 cut(s)	322, 524
LweI	GCATC	2 cut(s)	163, 529
MaeI	CTAG	2 cut(s)	17, 183
MaeII	ACGT	2 cut(s)	77, 193
MaeIII	GTNAC	2 cut(s)	233, 424
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	21, 272
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	419, 591, 625
MlyI	GAGTC	2 cut(s)	158, 467
MnlI	CCTC	2 cut(s)	206, 496
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	3 cut(s)	35, 357, 670
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	66, 399
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	562, 641
NlaIV	GGNNCC	2 cut(s)	156, 284
NmuCI	GTSAC	1 cut(s)	424
PceI	AGGCCT	2 cut(s)	48, 497
PdmI	GAANNNNTTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	312, 514
PleI	GAGTC	2 cut(s)	157, 466
PmaCI	CACGTG	1 cut(s)	194
PmlI	CACGTG	1 cut(s)	194
PpsI	GAGTC	2 cut(s)	157, 466
Ppu21I	YACGTR	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	591
PspCI	CACGTG	1 cut(s)	194
PspEI	GGTNACC	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	156, 284
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	3 cut(s)	35, 357, 670
SatI	GCNGC	2 cut(s)	311, 513
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	158, 467
SduI	GDGCHC	3 cut(s)	419, 591, 625
SetI	ASST	9 cut(s)	62, 80, 196, 224, 295, 373, 455, 517, 591
SfaNI	GCATC	2 cut(s)	163, 529
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	146, 366, 650
SmoI	CTYRAG	3 cut(s)	146, 366, 650
SseBI	AGGCCT	2 cut(s)	48, 497
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	2 cut(s)	17, 183
SstI	GAGCTC	1 cut(s)	591
StuI	AGGCCT	2 cut(s)	48, 497
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	112, 363
TaiI	ACGT	2 cut(s)	80, 196
TaqI	TCGA	2 cut(s)	431, 456
TaqII	GACCGA	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	35, 357, 670
Tru9I	TTAA	3 cut(s)	35, 357, 670
TscAI	CASTG	2 cut(s)	262, 419
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	310, 512
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	6 cut(s)	13, 17, 341, 575, 626, 650
TspRI	CASTG	2 cut(s)	262, 419
VpaK11BI	GGWCC	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	17, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.