Rorug05G0594900

Mitochondrial import receptor subunit TOM6 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
79319831 .. 79322171
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0594900.1

Sequence Viewer

Length: 597 bp
ATGGAAAAGCAAGGGAATAGCAGTAAAAGTAGAGAGTCAGAGTTTGTGCTGCAATGGGGGAACAAGAAGAGGCTTAGATGTCAGAAGGTGAAGGTCAAGAAAGAACGAAGCTTTGACAGCAACCCCAAACCCAGGAAAATCAAAGACTCTCCCTCTCCACTACCACAGCGCATCAACAACAGGAGCTCAGCGTCGCCAATGAATAGTAGAAAGTTATTTATCACATCGCCGGAGAAGGAAGATCGGTATTACACAACTAGGGGTTCCTTAGGTTTAGATGATAATGGTAAGATGTTAGGATTAGATCATCATGGTCATGCAGTGGAGGATAAAGGAAGCAATGTTTGGCCAAAATTGTTCCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCAATGAAAGGGTGCAGGTTACCTCAAAGGCCCAAGAAAAGAGGAAAGTTGCTTCAAAAAAGCTTACATTTGGTAATGCCAGGTGTATGGTTATCAGATTTGTGCCGAGAGAGGTATGAAGTGAGGGAGAAGAAGACTTCAAAAAAGAGAGCCAGGGGATTGAAGGCTATGGGAAGTTTGGATAGTGATTCAGATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.77

Weight (kDa)

10.09

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 123 - 172 1.7e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 3 cut(s) 455, 540, 562
AjnI CCWGG 3 cut(s) 131, 478, 551
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 3 cut(s) 111, 186, 462
AluI AGCT 3 cut(s) 111, 186, 462
Alw21I GWGCWC 1 cut(s) 188
AoxI GGCC 2 cut(s) 347, 428
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 268
BalI TGGCCA 1 cut(s) 349
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 133, 480, 553
BfaI CTAG 2 cut(s) 258, 372
BfuAI ACCTGC 1 cut(s) 405
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 3 cut(s) 133, 480, 553
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 3 cut(s) 133, 480, 553
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 539
Bpu1102I GCTNAGC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 131, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 3 cut(s) 59, 346, 408
BseBI CCWGG 3 cut(s) 133, 480, 553
BseDI CCNNGG 2 cut(s) 131, 552
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMI GCAATG 3 cut(s) 59, 346, 408
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 433
BshFI GGCC 2 cut(s) 349, 430
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 132
BsnI GGCC 2 cut(s) 349, 430
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 241, 304
Bsp1720I GCTNAGC 1 cut(s) 187
BspANI GGCC 2 cut(s) 349, 430
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 405
BsrDI GCAATG 3 cut(s) 59, 346, 408
BssECI CCNNGG 2 cut(s) 131, 552
BssMI GATC 2 cut(s) 241, 304
Bst2UI CCWGG 3 cut(s) 133, 480, 553
Bst6I CTCTTC 2 cut(s) 62, 381
BstDEI CTNAG 3 cut(s) 74, 187, 268
BstEII GGTNACC 1 cut(s) 417
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 244, 307
BstMBI GATC 2 cut(s) 241, 304
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 3 cut(s) 133, 480, 553
BstPI GGTNACC 1 cut(s) 417
BstSCI CCNGG 3 cut(s) 131, 478, 551
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 539
BstXI CCANNNNNNTGG 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 2 cut(s) 349, 430
BtgZI GCGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 405
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 1 cut(s) 180
CviAII CATG 3 cut(s) 311, 317, 397
CviJI RGCY 8 cut(s) 73, 111, 186, 349, 430, 462, 551, 566
CviKI_1 RGCY 8 cut(s) 73, 111, 186, 349, 430, 462, 551, 566
DdeI CTNAG 3 cut(s) 74, 187, 268
DpnI GATC 2 cut(s) 243, 306
DpnII GATC 2 cut(s) 241, 304
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 62, 381
EarI CTCTTC 2 cut(s) 62, 381
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 417
EcoICRI GAGCTC 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 417
EcoRII CCWGG 3 cut(s) 131, 478, 551
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 3 cut(s) 314, 320, 400
FaiI YATR 6 cut(s) 312, 318, 398, 487, 516, 569
FatI CATG 3 cut(s) 310, 316, 396
Fnu4HI GCNGC 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 258, 372
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 349, 430
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 171
Hin1II CATG 3 cut(s) 314, 320, 400
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HindIII AAGCTT 2 cut(s) 109, 460
HinfI GANTC 3 cut(s) 35, 146, 587
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 40, 84, 496, 592
Hpy188III TCNNGA 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 4 cut(s) 79, 85, 229, 556
HpyCH4V TGCA 3 cut(s) 52, 320, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 74, 187, 268
Hsp92II CATG 3 cut(s) 314, 320, 400
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 241, 304
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 9 cut(s) 118, 145, 166, 243, 400, 465, 492, 538, 565
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 258, 372
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 243, 306
MboI GATC 2 cut(s) 241, 304
MboII GAAGA 5 cut(s) 79, 251, 398, 541, 544
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 2 cut(s) 44, 140
MnlI CCTC 8 cut(s) 63, 163, 319, 382, 432, 434, 504, 516
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MslI CAYNNNNRTG 2 cut(s) 315, 401
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 133, 480, 553
MvaI CCWGG 3 cut(s) 133, 480, 553
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 2 cut(s) 241, 304
NlaIII CATG 3 cut(s) 314, 320, 400
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 530
PfeI GAWTC 1 cut(s) 587
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 2 cut(s) 43, 140
PpsI GAGTC 2 cut(s) 43, 140
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 3 cut(s) 131, 478, 551
PspEI GGTNACC 1 cut(s) 417
PspGI CCWGG 3 cut(s) 131, 478, 551
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 429
RseI CAYNNNNRTG 2 cut(s) 315, 401
SacI GAGCTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 241, 304
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 2 cut(s) 44, 140
ScrFI CCNGG 3 cut(s) 133, 480, 553
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 315, 401
Sse9I AATT 1 cut(s) 353
SspMI CTAG 2 cut(s) 258, 372
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 131, 478, 551
TasI AATT 1 cut(s) 353
TfiI GAWTC 1 cut(s) 587
TscAI CASTG 1 cut(s) 327
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 215, 385, 419, 531
TspRI CASTG 1 cut(s) 327
XspI CTAG 2 cut(s) 258, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.