Rroxscaffold_4G00314540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000225
Physical Location & Seq
Reverse (-)
38531063 .. 38531684
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314540.1

Sequence Viewer

Length: 189 bp
ATGAGTTCAAAACGGAACCGTGTCCTCCGCCGTCGATGCCGGCCGTGTTGCGGTGCAAGGCTGCCACCTGCAGCTGCGCAAGGTCGAGGCGAACCTATAGGAAGTGGTCTGGTCTTGATTGGTGGGTGGTGGACGGAGAGAGAGCTTGGAGAAGCAATGCTTTGTTTTTCGGGTTGTTTTCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.85

Weight (kDa)

10.68

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc16I TGCGCA 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 76
AciI CCGC 2 cut(s) 28, 51
AcoI YGGCCR 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 9
AluBI AGCT 2 cut(s) 74, 145
AluI AGCT 2 cut(s) 74, 145
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 61, 71, 74
AspLEI GCGC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 48, 61, 83
BceAI ACGGC 2 cut(s) 15, 28
BfmI CTRYAG 2 cut(s) 69, 96
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 3 cut(s) 62, 72, 75
BlsI GCNGC 3 cut(s) 63, 73, 76
BmiI GGNNCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 48, 61, 83
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 1 cut(s) 43
BspACI CCGC 2 cut(s) 28, 51
BspANI GGCC 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 41
BstHHI GCGC 1 cut(s) 79
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSFI CTRYAG 2 cut(s) 69, 96
BstV1I GCAGC 3 cut(s) 48, 61, 83
BstZI CGGCCG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 43
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 39
CviJI RGCY 4 cut(s) 43, 61, 74, 145
CviKI_1 RGCY 4 cut(s) 43, 61, 74, 145
EaeI YGGCCR 1 cut(s) 41
EagI CGGCCG 1 cut(s) 41
EciI GGCGGA 1 cut(s) 17
EclXI CGGCCG 1 cut(s) 41
Eco52I CGGCCG 1 cut(s) 41
FaiI YATR 1 cut(s) 98
FalI AAGNNNNNCTT 2 cut(s) 144, 176
Fnu4HI GCNGC 3 cut(s) 62, 72, 75
Fsp4HI GCNGC 3 cut(s) 62, 72, 75
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 62, 72, 75
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 79
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HpaII CCGG 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 56, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HspAI GCGC 1 cut(s) 77
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 53, 81, 95
Lsp1109I GCAGC 3 cut(s) 48, 61, 83
LweI GCATC 1 cut(s) 26
MnlI CCTC 2 cut(s) 35, 80
MroNI GCCGGC 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 36
NaeI GCCGGC 1 cut(s) 41
NgoMIV GCCGGC 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 17
NsbI TGCGCA 1 cut(s) 78
PaqCI CACCTGC 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 63, 73, 76
PspN4I GGNNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 74
SatI GCNGC 3 cut(s) 62, 72, 75
SetI ASST 5 cut(s) 70, 76, 85, 97, 147
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 2 cut(s) 69, 96
SsiI CCGC 2 cut(s) 28, 51
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 34, 85
TseI GCWGC 3 cut(s) 61, 71, 74
TspGWI ACGGA 2 cut(s) 28, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.