Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

17618812 .. 17621073

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCAGAAGTATTGTCAGCAGACCATAGTTTCGTAACAGATAGAGTGGGAGCAGAAGAAGATTCAAATTTTTCGTTTCTCCCGTTGGCCCATATATATGGCCAAATAATCGAGAGCTATTGCATCTACAAGGGATCTTCAATAGGCTTCTGGCAAGGCATAAGTATATGTGTCATTCTTGCTACATTCTTTTTTTTTCTTGTTTCCTTATCAAAACTTGATTGGTATTCTCTTCTTTACTTACCAATTTCAACATCTGTCCAATGTGATTGCCGTTACTTGCAGGATGTCAGGTTTTTACTGGACGACCTTCAGGAACTAAAGCCTACTATGTTTTGTGGGGTTCCTCGAGTGTATGATCGTATATACACTGGTATTGCTAGTAAAGTTTCATCTGATGGTGTGCTGAGGAAGACCCTTTTCCGGTATGCATATAACTACAAGTTGGCAAAACTGGAGAAGCTTGTATTTAACAAGATAAAACAAGCATTAGGAGGAAGAGTTCGTATAATGTTGTCTGGTGCTGCGCCTTTGCCCAGGCATGTGGAGGAATTTTTTAGGGTCACCAGCTGCAGCACTTTATCACAAGGATATGAAGCAGATATATATGAAACGAAGAGTACTAGAGTTCATCAGTTAGGACTTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGAACTGTGGGTGTCCCCTTGACAACTATTGAAGCACGGCTTGAGTCGGTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

251

Amino Acids

28.17

Weight (kDa)

6.88

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	95 - 247	4.7e-13	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	67, 551
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	622
AfiI	CCNNNNNNNGG	2 cut(s)	423, 698
AgsI	TTSAA	4 cut(s)	66, 141, 252, 731
AjnI	CCWGG	1 cut(s)	536
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	4 cut(s)	117, 463, 570, 654
AluI	AGCT	4 cut(s)	117, 463, 570, 654
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	2 cut(s)	87, 100
ApeKI	GCWGC	3 cut(s)	524, 570, 573
ApoI	RAATTY	2 cut(s)	67, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	2 cut(s)	88, 748
AsuHPI	GGTGA	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	748
BalI	TGGCCA	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	407
BbvI	GCAGC	3 cut(s)	511, 557, 585
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	2 cut(s)	258, 752
BciT130I	CCWGG	1 cut(s)	538
BfaI	CTAG	2 cut(s)	381, 624
BfmI	CTRYAG	1 cut(s)	571
BisI	GCNGC	3 cut(s)	525, 571, 574
BlsI	GCNGC	3 cut(s)	526, 572, 575
BmcAI	AGTACT	1 cut(s)	622
Bme1390I	CCNGG	1 cut(s)	538
Bme18I	GGWCC	1 cut(s)	748
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	2 cut(s)	88, 748
BmiI	GGNNCC	2 cut(s)	345, 750
BmrFI	CCNGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	536
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 698
Bse1I	ACTGG	3 cut(s)	306, 376, 459
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	423, 698
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	3 cut(s)	306, 376, 459
BseXI	GCAGC	3 cut(s)	511, 557, 585
BshFI	GGCC	2 cut(s)	89, 102
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	698, 734
BslI	CCNNNNNNNGG	2 cut(s)	423, 698
BsmFI	GGGAC	2 cut(s)	698, 734
BsnI	GGCC	2 cut(s)	89, 102
BsoBI	CYCGRG	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	134, 358
BspANI	GGCC	2 cut(s)	89, 102
BspCNI	CTCAG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	345, 750
BspMAI	CTGCAG	1 cut(s)	575
BspPI	GGATC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	3 cut(s)	306, 376, 459
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	2 cut(s)	134, 358
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	3 cut(s)	237, 493, 611
BstDEI	CTNAG	1 cut(s)	407
BstEII	GGTNACC	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	137, 361
BstMBI	GATC	2 cut(s)	134, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	660
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	536
BstSFI	CTRYAG	1 cut(s)	571
BstV1I	GCAGC	3 cut(s)	511, 557, 585
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	2 cut(s)	98, 544
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	89, 102
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	369
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	88, 748
Csp6I	GTAC	1 cut(s)	621
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	2 cut(s)	136, 360
DpnII	GATC	2 cut(s)	134, 358
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	237, 493, 611
EarI	CTCTTC	3 cut(s)	237, 493, 611
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	348
Eco91I	GGTNACC	1 cut(s)	562
EcoO65I	GGTNACC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	536
EcoT22I	ATGCAT	1 cut(s)	433
FaeI	CATG	1 cut(s)	545
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FaqI	GGGAC	2 cut(s)	698, 734
FatI	CATG	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	525, 571, 574
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	525, 571, 574
FspBI	CTAG	2 cut(s)	381, 624
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	3 cut(s)	525, 571, 574
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	89, 102
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	62, 743
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	556
Hpy188I	TCNGA	2 cut(s)	7, 397
Hpy188III	TCNNGA	2 cut(s)	112, 314
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	4 cut(s)	123, 283, 431, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	660
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	671
Hsp92II	CATG	1 cut(s)	545
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	134, 358
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	3 cut(s)	511, 557, 585
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	381, 624
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	3 cut(s)	34, 275, 562
MalI	GATC	2 cut(s)	136, 360
MboI	GATC	2 cut(s)	134, 358
MboII	GAAGA	7 cut(s)	68, 71, 129, 224, 424, 510, 628
MflI	RGATCY	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	67, 246, 551
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	752
MnlI	CCTC	4 cut(s)	357, 402, 488, 541
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	570
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	660
NdeII	GATC	2 cut(s)	134, 358
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	2 cut(s)	345, 750
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	545
PaeR7I	CTCGAG	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	526, 572, 575
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	536
PspEI	GGTNACC	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	345, 750
PspPI	GGNCC	2 cut(s)	88, 748
PspXI	VCTCGAGB	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	570
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	525, 571, 574
Sau3AI	GATC	2 cut(s)	134, 358
Sau96I	GGNCC	2 cut(s)	88, 748
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	1 cut(s)	538
SetI	ASST	7 cut(s)	119, 296, 312, 465, 572, 656, 674
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	571
Sfr274I	CTCGAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	748
SlaI	CTCGAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	348, 740
SmoI	CTYRAG	2 cut(s)	348, 740
Sse9I	AATT	3 cut(s)	67, 246, 551
SspMI	CTAG	2 cut(s)	381, 624
StyD4I	CCNGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	2 cut(s)	111, 349
TaqII	GACCGA	1 cut(s)	736
TasI	AATT	3 cut(s)	67, 246, 551
TatI	WGTACW	1 cut(s)	620
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	3 cut(s)	524, 570, 573
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	4 cut(s)	381, 609, 620, 624
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	748
XapI	RAATTY	2 cut(s)	67, 551
XceI	RCATGY	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	348
XspI	CTAG	2 cut(s)	381, 624
ZrmI	AGTACT	1 cut(s)	622
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.