Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

21191581 .. 21255933

Gene Structure 64353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG134900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCCACCCAATTGAGAGCTTCTTCTTCTTTCTCCACTGCTTTTTCCACCCGTTCAGCAATCAGAAACCGCGGTCTCAATCTTGTAAGTCAAGTGCCCAACCAAATTGCCTCCAATGGAGTTGACTATCGAACTCTCGGCAACAACTTGAGTTTGGAAACTACTGAACAGTACCAAGTGTTTGAAAGCCAGCCGCAACAAAAGTTCAGTAGCGAACCACCAAACTTGCCAAACAGTACGGACATCTTAACATCTAAACTTTCATCTTGTCGGCAGATTTGGGTTTATGGGAACAGCTTCGTAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACCTGAAGGCAAGAAAATACATTTTGGATGAGCTGAATAGTACGGGTCGGAAACAACAACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCACATTACTCCAACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGACCGAGTTGAAAAACTTTATAGTGAGGCAAATGGTGGAAAAGTGCATCAAACAGAAGACAAACGTGGCTGTTTAAGGTGGAAGCAACAACTTCGCATCGAAACACTACACGATGATCCTTCTGGAGCAGCTTCCCCACTGTTTGACCGGTCGCCGGTGGTAGGCGATCTAGGAGTTAGAGCTGGTAGGCGACGAGGACCAGTCGCCGCTGGCAAGCGATCTCGGAGTCGGAGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

261

Amino Acids

29.68

Weight (kDa)

9.7

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	72
AciI	CCGC	5 cut(s)	70, 72, 194, 524, 753
AclWI	GGATC	2 cut(s)	498, 656
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	173, 238, 409
AfiI	CCNNNNNNNGG	2 cut(s)	700, 707
AgeI	ACCGGT	1 cut(s)	693
AgsI	TTSAA	3 cut(s)	185, 511, 557
AluBI	AGCT	6 cut(s)	20, 297, 326, 400, 677, 728
AluI	AGCT	6 cut(s)	20, 297, 326, 400, 677, 728
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	498, 656
AoxI	GGCC	2 cut(s)	3, 306
ApeKI	GCWGC	2 cut(s)	323, 674
AsiGI	ACCGGT	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	547, 743
AvaII	GGWCC	2 cut(s)	547, 743
BaeGI	GKGCMC	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	335, 686
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	716
BisI	GCNGC	4 cut(s)	194, 324, 675, 753
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	4 cut(s)	195, 325, 676, 754
Bme18I	GGWCC	2 cut(s)	547, 743
BmgT120I	GGNCC	2 cut(s)	547, 743
BmiI	GGNNCC	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	340, 601, 651
BmuI	ACTGGG	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	70, 309
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	2 cut(s)	700, 707
Bse118I	RCCGGY	2 cut(s)	693, 700
Bse1I	ACTGG	2 cut(s)	323, 746
BseDI	CCNNGG	2 cut(s)	70, 309
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	700, 707
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	323, 746
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	335, 686
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	698
BshFI	GGCC	2 cut(s)	5, 308
BshTI	ACCGGT	1 cut(s)	693
BsiEI	CGRYCG	1 cut(s)	698
BsiSI	CCGG	2 cut(s)	694, 701
BslI	CCNNNNNNNGG	2 cut(s)	700, 707
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	5, 308
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	490, 661, 712, 764
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	5 cut(s)	70, 72, 194, 524, 753
BspANI	GGCC	2 cut(s)	5, 308
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	498, 656
BspTNI	GGTCTC	1 cut(s)	80
BsrFI	RCCGGY	2 cut(s)	693, 700
BsrI	ACTGG	2 cut(s)	323, 746
BssAI	RCCGGY	2 cut(s)	693, 700
BssECI	CCNNGG	2 cut(s)	70, 309
BssMI	GATC	4 cut(s)	490, 661, 712, 764
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	171, 236, 687
BstC8I	GCNNGC	3 cut(s)	191, 757, 761
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	4 cut(s)	493, 664, 715, 767
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	490, 661, 712, 764
BstMCI	CGRYCG	1 cut(s)	698
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	335, 686
BstV2I	GAAGAC	1 cut(s)	609
BsuRI	GGCC	2 cut(s)	5, 308
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 683
Cac8I	GCNNGC	3 cut(s)	191, 757, 761
Cfr10I	RCCGGY	2 cut(s)	693, 700
Cfr13I	GGNCC	2 cut(s)	547, 743
Cfr42I	CCGCGG	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	172, 237, 408
CspAI	ACCGGT	1 cut(s)	693
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviQI	GTAC	3 cut(s)	172, 237, 408
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	4 cut(s)	492, 663, 714, 766
DpnII	GATC	4 cut(s)	490, 661, 712, 764
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	547, 743
Eco57I	CTGAAG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaiI	YATR	3 cut(s)	288, 482, 567
Fnu4HI	GCNGC	4 cut(s)	194, 324, 675, 753
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	4 cut(s)	194, 324, 675, 753
FspBI	CTAG	1 cut(s)	716
GluI	GCNGC	4 cut(s)	194, 324, 675, 753
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	5, 308
HapII	CCGG	2 cut(s)	694, 701
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	772
HpaII	CCGG	2 cut(s)	694, 701
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	65, 417, 771, 777
Hpy188III	TCNNGA	1 cut(s)	669
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	367, 675
HpyCH4III	ACNGT	3 cut(s)	171, 236, 687
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	1 cut(s)	592
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	610
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	490, 661, 712, 764
LmnI	GCTCC	1 cut(s)	671
LpnPI	CCDG	9 cut(s)	203, 304, 383, 654, 707, 714, 714, 741, 759
Lsp1109I	GCAGC	2 cut(s)	335, 686
LweI	GCATC	3 cut(s)	340, 601, 651
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	1 cut(s)	610
MalI	GATC	4 cut(s)	492, 663, 714, 766
MboI	GATC	4 cut(s)	490, 661, 712, 764
MboII	GAAGA	3 cut(s)	15, 18, 614
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	11, 105, 527
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	781
MmeI	TCCRAC	3 cut(s)	395, 527, 755
MnlI	CCTC	6 cut(s)	121, 307, 425, 480, 565, 734
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	248, 446, 620
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	72, 326, 755
MspI	CCGG	2 cut(s)	694, 701
MunI	CAATTG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	72
NdeII	GATC	4 cut(s)	490, 661, 712, 764
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	296
PinAI	ACCGGT	1 cut(s)	693
PkrI	GCNGC	4 cut(s)	195, 325, 676, 754
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	2 cut(s)	547, 743
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	173, 238, 409
RsaNI	GTAC	3 cut(s)	172, 237, 408
SacII	CCGCGG	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	248, 446, 620
SatI	GCNGC	4 cut(s)	194, 324, 675, 753
Sau3AI	GATC	4 cut(s)	490, 661, 712, 764
Sau96I	GGNCC	2 cut(s)	547, 743
SchI	GAGTC	1 cut(s)	781
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	9 cut(s)	22, 299, 328, 372, 402, 613, 626, 679, 730
SfaNI	GCATC	3 cut(s)	340, 601, 651
Sfr303I	CCGCGG	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	700
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	547, 743
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	11, 105, 527
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	5 cut(s)	70, 72, 194, 524, 753
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	716
StuI	AGGCCT	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	171, 236, 687
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	3 cut(s)	130, 430, 645
TaqII	GACCGA	1 cut(s)	564
TasI	AATT	3 cut(s)	11, 105, 527
TauI	GCSGC	2 cut(s)	196, 755
Tru1I	TTAA	3 cut(s)	248, 446, 620
Tru9I	TTAA	3 cut(s)	248, 446, 620
TscAI	CASTG	2 cut(s)	43, 690
TseI	GCWGC	2 cut(s)	323, 674
TspDTI	ATGAA	2 cut(s)	252, 446
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	43, 690
VpaK11BI	GGWCC	2 cut(s)	547, 743
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.