Prupe.8G108600_v2.0.a1

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
13896422 .. 13898346
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G108600.1

Sequence Viewer

Length: 780 bp
ATGCTTGGTCGGCGTCAAGTCACGGAAACAAAGGTGGGTCCCTATGTATGGCTTACATATCAAGAGGTTCATGATGCCGCCCTTCGAATGGGTTCAGCCATCAGGAGCCGCGGTGTCAATCCTGGAGATCGTTGTGGTATATTCGGATCAAACTGCCCCCAGTGGCTTACTGCAATGGAGGCCTGTAATAGCCATACCATAACGTATGTTCCGCTGTATGACACCCTTGGCTTCACTGAAAGCTGTGGTGGATGTCTTACATCTATTGGCAATGTTTTTCCTATGATGGGAACTGTGGGTGTTCCCATGACAACTATTGAAACAAGGCTTGAGTCAGTGCCAGAAATGGGATATGATGCACTTTCCAGTGTGCCAGGTGGAGAGATTTGCCTGAGAGGAAAATCCTTGTTTTCTGGTTACCACAAGCGACAAGATCTGACAGAGGAAGTCCTTGTTGATGGGGTGTGGATTGCCGGTGACATTGGAGAATTGCAGCCTATTGGAGCAACGGAAATCATAGATAGGACAAAGAATATATTTAAACTGTCTCAAGGTGATTATGTTGCTGTGGAAAACATTGAAAGCAAATACCTGCGATGCCCTCTTATCACATCGATTTGGGTTTATGGGAACAGCTTTGAGTCGTTTCTTGTTGCTGTGGTGGTCCCTGACAGAAAGGCATTGGAGGATTGGGCAGCGGAGCATAATTTGACCGATGATTTCAAATCATTATGTCAAAACCTGAAGGCAAGAAAGTACATTTTGGATGAGCTCAATTAG

Protein Analysis

260

Amino Acids

28.68

Weight (kDa)

5.0

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 600
AccII CGCG 1 cut(s) 111
AciI CCGC 5 cut(s) 78, 109, 111, 212, 698
AclWI GGATC 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 764
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 4 cut(s) 48, 88, 287, 347
AgsI TTSAA 3 cut(s) 320, 581, 724
AjnI CCWGG 2 cut(s) 121, 373
AluBI AGCT 3 cut(s) 243, 636, 772
AluI AGCT 3 cut(s) 243, 636, 772
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 493, 695
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 38, 664
AsuHPI GGTGA 2 cut(s) 488, 566
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 2 cut(s) 38, 664
BanII GRGCYC 1 cut(s) 774
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 505, 707
BccI CCATC 3 cut(s) 107, 280, 452
BciT130I CCWGG 2 cut(s) 123, 375
BcoDI GTCTC 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 600
BglII AGATCT 1 cut(s) 433
BisI GCNGC 4 cut(s) 78, 109, 494, 696
BlsI GCNGC 4 cut(s) 79, 110, 495, 697
Bme1390I CCNGG 2 cut(s) 123, 375
Bme18I GGWCC 2 cut(s) 38, 664
BmgT120I GGNCC 2 cut(s) 38, 664
BmiI GGNNCC 4 cut(s) 39, 40, 107, 666
BmrFI CCNGG 2 cut(s) 123, 375
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 3 cut(s) 64, 346, 587
BmuI ACTGGG 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 350, 534
Bsa29I ATCGAT 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 109, 226
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 88, 287, 347
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 160, 366
Bse3DI GCAATG 2 cut(s) 180, 277
BseBI CCWGG 2 cut(s) 123, 375
BseCI ATCGAT 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 109, 226
BseGI GGATG 2 cut(s) 257, 772
BseLI CCNNNNNNNGG 4 cut(s) 48, 88, 287, 347
BseMI GCAATG 2 cut(s) 180, 277
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 160, 366
BseXI GCAGC 2 cut(s) 505, 707
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 774
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 2 cut(s) 24, 650
BslI CCNNNNNNNGG 4 cut(s) 48, 88, 287, 347
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 2 cut(s) 24, 650
BsnI GGCC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 774
Bsp143I GATC 3 cut(s) 127, 146, 433
BspACI CCGC 5 cut(s) 78, 109, 111, 212, 698
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 384
BspDI ATCGAT 1 cut(s) 614
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 39, 40, 107, 666
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 85
BsrDI GCAATG 2 cut(s) 180, 277
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 2 cut(s) 160, 366
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 2 cut(s) 109, 226
BssMI GATC 3 cut(s) 127, 146, 433
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 123, 375
Bst4CI ACNGT 2 cut(s) 295, 546
BstACI GRCGYC 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 392
BstDSI CCRYGG 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 2 cut(s) 257, 772
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 3 cut(s) 130, 149, 436
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 3 cut(s) 127, 146, 433
BstMWI GCNNNNNNNGC 2 cut(s) 10, 179
BstNI CCWGG 2 cut(s) 123, 375
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 2 cut(s) 121, 373
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 505, 707
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
Bsu15I ATCGAT 1 cut(s) 614
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 614
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 2 cut(s) 257, 772
BtsIMutI CAGTG 4 cut(s) 167, 234, 342, 373
BveI ACCTGC 1 cut(s) 600
CciI TCATGA 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 38, 664
Cfr42I CCGCGG 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 614
CseI GACGC 1 cut(s) 2
Csp6I GTAC 1 cut(s) 757
CviAII CATG 2 cut(s) 71, 307
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 1 cut(s) 392
DpnI GATC 3 cut(s) 129, 148, 435
DpnII GATC 3 cut(s) 127, 146, 433
DraI TTTAAA 1 cut(s) 541
Ecl136II GAGCTC 1 cut(s) 772
Eco130I CCWWGG 1 cut(s) 226
Eco147I AGGCCT 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 774
Eco47I GGWCC 2 cut(s) 38, 664
Eco53kI GAGCTC 1 cut(s) 772
Eco57I CTGAAG 1 cut(s) 764
Eco91I GGTNACC 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 121, 373
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 74, 310
FaqI GGGAC 2 cut(s) 24, 650
FatI CATG 2 cut(s) 70, 306
Fnu4HI GCNGC 4 cut(s) 78, 109, 494, 696
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 4 cut(s) 78, 109, 494, 696
GluI GCNGC 4 cut(s) 78, 109, 494, 696
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 474
HgaI GACGC 1 cut(s) 2
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 2 cut(s) 74, 310
HinfI GANTC 2 cut(s) 332, 641
HpaII CCGG 1 cut(s) 474
HphI GGTGA 2 cut(s) 488, 566
Hpy188I TCNGA 2 cut(s) 146, 438
Hpy188III TCNNGA 3 cut(s) 62, 71, 103
HpyAV CCTTC 2 cut(s) 92, 739
HpyCH4III ACNGT 2 cut(s) 295, 546
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 173, 359, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 179
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 2 cut(s) 74, 310
KflI GGGWCCC 1 cut(s) 38
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 127, 146, 433
LmnI GCTCC 3 cut(s) 105, 503, 700
Lsp1109I GCAGC 2 cut(s) 505, 707
LweI GCATC 3 cut(s) 64, 346, 587
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 3 cut(s) 19, 416, 476
MalI GATC 3 cut(s) 129, 148, 435
MboI GATC 3 cut(s) 127, 146, 433
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 774
MluCI AATT 3 cut(s) 488, 706, 775
MlyI GAGTC 2 cut(s) 341, 650
MnlI CCTC 6 cut(s) 58, 172, 389, 436, 612, 679
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 1 cut(s) 540
MspA1I CMGCKG 3 cut(s) 111, 214, 698
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 2 cut(s) 123, 375
MvaI CCWGG 2 cut(s) 123, 375
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 10, 179
NdeII GATC 3 cut(s) 127, 146, 433
NlaIII CATG 2 cut(s) 74, 310
NlaIV GGNNCC 4 cut(s) 39, 40, 107, 666
NmuCI GTSAC 2 cut(s) 19, 476
NspV TTCGAA 1 cut(s) 85
PagI TCATGA 1 cut(s) 70
PceI AGGCCT 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 4 cut(s) 79, 110, 495, 697
PleI GAGTC 2 cut(s) 340, 649
PpsI GAGTC 2 cut(s) 340, 649
PpuMI RGGWCCY 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 121, 373
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 2 cut(s) 121, 373
PspN4I GGNNCC 4 cut(s) 39, 40, 107, 666
PspPI GGNCC 2 cut(s) 38, 664
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SacI GAGCTC 1 cut(s) 774
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 4 cut(s) 78, 109, 494, 696
Sau3AI GATC 3 cut(s) 127, 146, 433
Sau96I GGNCC 2 cut(s) 38, 664
SchI GAGTC 2 cut(s) 341, 650
ScrFI CCNGG 2 cut(s) 123, 375
SduI GDGCHC 1 cut(s) 774
SfaNI GCATC 3 cut(s) 64, 346, 587
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 2 cut(s) 38, 664
SmlI CTYRAG 2 cut(s) 329, 549
SmoI CTYRAG 2 cut(s) 329, 549
Sse9I AATT 3 cut(s) 488, 706, 775
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 5 cut(s) 78, 109, 111, 212, 698
SstI GAGCTC 1 cut(s) 774
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 121, 373
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 295, 546
TaiI ACGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 85, 614
TaqII GACCGA 1 cut(s) 728
TasI AATT 3 cut(s) 488, 706, 775
TatI WGTACW 1 cut(s) 756
TauI GCSGC 2 cut(s) 80, 111
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 4 cut(s) 167, 241, 342, 373
TseFI GTSAC 2 cut(s) 19, 476
TseI GCWGC 2 cut(s) 493, 695
Tsp45I GTSAC 2 cut(s) 19, 476
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 2 cut(s) 38, 524
TspRI CASTG 4 cut(s) 167, 241, 342, 373
VpaK11BI GGWCC 2 cut(s) 38, 664
XmnI GAANNNNTTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.