Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003487.1

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

10124 .. 12142

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003487.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgcatctacaagggatcttcaataggcttctggatgtcaggtttttactggatgaccttcaggagctaaagcctactatgttttgtggtgttcctcgattaatatttggcttaaatattgtttccaatggtattgctagtagagtttcatctggtggtgtgctgaggaagaccattttccagtatgcatataactacaagttggcaaatctggagaagggtctaccacaagaaaaagtggcacttctcttggacaagcttgtgtttaacaagataaaacaaggattaggaggacgagttcatataatgttgtctggtgctgcacctttgcccgggccgttgaggaattttctagggtcaccagctgcagcactttatcacaaggatatggccttactgatagctgtggtggctgttttacaactgggatatgatgcactttctagtgtgccacgtggagagatttgcctcagaggaaaaaccttgttttctggttacctcaagtggcaagatctcactgaagaagtccttattgatgggcggttccatacaggtgatattggagaatggcagcctaatggagcaatgaaagctatagacaggaaaaagaacatatttaaactgtctcaagttgaatatgttgctgtggaaagcattgaaagcaaatacttgcaatgcccccttatcacatcgatttgggtttttgggaacatcttcgagtcatttcttgttgctgtggttgttcctgagagaaaggccttggaggactgggcagctgagcatcatttgactgatgactacaaatcattgtgtcaaaatatgaaggcaagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

278

Amino Acids

31.09

Weight (kDa)

9.05

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	1 cut(s)	541
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	44, 540
AcvI	CACGTG	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	22, 635, 659
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	6 cut(s)	67, 259, 365, 404, 593, 776
AluI	AGCT	6 cut(s)	67, 259, 365, 404, 593, 776
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	335, 390, 756
ApeKI	GCWGC	5 cut(s)	320, 365, 368, 571, 773
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	713
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	2 cut(s)	333, 334
AsuHPI	GGTGA	2 cut(s)	351, 566
AvaI	CYCGRG	1 cut(s)	332
BbrPI	CACGTG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	5 cut(s)	307, 352, 380, 583, 785
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	333, 334
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	3 cut(s)	138, 353, 444
BfmI	CTRYAG	2 cut(s)	366, 594
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	5 cut(s)	321, 366, 369, 572, 774
BlpI	GCTNAGC	1 cut(s)	777
BlsI	GCNGC	5 cut(s)	322, 367, 370, 573, 775
Bme1390I	CCNGG	2 cut(s)	333, 334
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	2 cut(s)	333, 334
BmrI	ACTGGG	2 cut(s)	434, 778
BmsI	GCATC	3 cut(s)	13, 424, 790
BmuI	ACTGGG	2 cut(s)	434, 778
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	2 cut(s)	485, 612
BpuMI	CCSGG	2 cut(s)	333, 334
Bsa29I	ATCGAT	1 cut(s)	692
BsaAI	YACGTR	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	332, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	4 cut(s)	54, 181, 429, 773
Bse3DI	GCAATG	2 cut(s)	591, 680
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	2 cut(s)	332, 759
BseGI	GGATG	2 cut(s)	40, 58
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	2 cut(s)	591, 680
BseMII	CTCAG	4 cut(s)	155, 484, 738, 768
BseNI	ACTGG	4 cut(s)	54, 181, 429, 773
BseXI	GCAGC	5 cut(s)	307, 352, 380, 583, 785
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	337, 392, 758
BshVI	ATCGAT	1 cut(s)	692
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	630
BsnI	GGCC	3 cut(s)	337, 392, 758
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	15, 511
Bsp1720I	GCTNAGC	1 cut(s)	777
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	3 cut(s)	337, 392, 758
BspCNI	CTCAG	4 cut(s)	156, 483, 739, 769
BspDI	ATCGAT	1 cut(s)	692
BspLI	GGNNCC	1 cut(s)	545
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	591, 680
BsrI	ACTGG	4 cut(s)	54, 181, 429, 773
BssECI	CCNNGG	2 cut(s)	332, 759
BssMI	GATC	2 cut(s)	15, 511
BssT1I	CCWWGG	1 cut(s)	759
Bst4CI	ACNGT	1 cut(s)	624
BstBAI	YACGTR	1 cut(s)	455
BstDEI	CTNAG	4 cut(s)	164, 470, 747, 777
BstEII	GGTNACC	2 cut(s)	357, 494
BstF5I	GGATG	2 cut(s)	40, 58
BstKTI	GATC	2 cut(s)	18, 514
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	2 cut(s)	15, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 590, 660
BstPI	GGTNACC	2 cut(s)	357, 494
BstSCI	CCNGG	2 cut(s)	331, 332
BstSFI	CTRYAG	2 cut(s)	366, 594
BstV1I	GCAGC	5 cut(s)	307, 352, 380, 583, 785
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	15, 511
BstYI	RGATCY	2 cut(s)	15, 511
Bsu15I	ATCGAT	1 cut(s)	692
BsuRI	GGCC	3 cut(s)	337, 392, 758
BsuTUI	ATCGAT	1 cut(s)	692
BtsCI	GGATG	2 cut(s)	40, 58
BtsIMutI	CAGTG	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	335
Cfr9I	CCCGGG	1 cut(s)	332
ClaI	ATCGAT	1 cut(s)	692
DdeI	CTNAG	4 cut(s)	164, 470, 747, 777
DpnI	GATC	2 cut(s)	17, 513
DpnII	GATC	2 cut(s)	15, 511
DraI	TTTAAA	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	758
Eco57I	CTGAAG	2 cut(s)	44, 540
Eco72I	CACGTG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	2 cut(s)	357, 494
EcoO65I	GGTNACC	2 cut(s)	357, 494
EcoT14I	CCWWGG	1 cut(s)	759
EcoT22I	ATGCAT	2 cut(s)	6, 190
ErhI	CCWWGG	1 cut(s)	759
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 513, 545
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	321, 366, 369, 572, 774
FokI	GGATG	2 cut(s)	47, 65
Fsp4HI	GCNGC	5 cut(s)	321, 366, 369, 572, 774
FspBI	CTAG	3 cut(s)	138, 353, 444
GluI	GCNGC	5 cut(s)	321, 366, 369, 572, 774
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	3 cut(s)	337, 392, 758
HapII	CCGG	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	719
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	351, 566
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	473
Hpy188III	TCNNGA	4 cut(s)	32, 62, 212, 746
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	68, 211, 817
HpyCH4III	ACNGT	1 cut(s)	624
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	4, 188, 323, 368, 437, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 590, 660
HpyF3I	CTNAG	4 cut(s)	164, 470, 747, 777
HpySE526I	ACGT	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	15, 511
LmnI	GCTCC	2 cut(s)	64, 581
Lsp1109I	GCAGC	5 cut(s)	307, 352, 380, 583, 785
LweI	GCATC	3 cut(s)	13, 424, 790
MaeI	CTAG	3 cut(s)	138, 353, 444
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	357, 494
MalI	GATC	2 cut(s)	17, 513
MboI	GATC	2 cut(s)	15, 511
MboII	GAAGA	4 cut(s)	10, 181, 533, 706
MflI	RGATCY	2 cut(s)	15, 511
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	728
MnlI	CCTC	8 cut(s)	105, 159, 284, 336, 467, 479, 509, 757
Mph1103I	ATGCAT	2 cut(s)	6, 190
MroXI	GAANNNNTTC	1 cut(s)	713
MseI	TTAA	4 cut(s)	101, 113, 267, 618
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	2 cut(s)	365, 776
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	333, 334
MwoI	GCNNNNNNNGC	3 cut(s)	410, 590, 660
NciI	CCSGG	2 cut(s)	333, 334
NdeII	GATC	2 cut(s)	15, 511
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	357
NsiI	ATGCAT	2 cut(s)	6, 190
PceI	AGGCCT	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	713
PkrI	GCNGC	5 cut(s)	322, 367, 370, 573, 775
PleI	GAGTC	1 cut(s)	727
PmaCI	CACGTG	1 cut(s)	455
PmlI	CACGTG	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	727
Ppu21I	YACGTR	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	101
PspCI	CACGTG	1 cut(s)	455
PspEI	GGTNACC	2 cut(s)	357, 494
PspN4I	GGNNCC	1 cut(s)	545
PspPI	GGNCC	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	15, 511
PvuII	CAGCTG	2 cut(s)	365, 776
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	101, 113, 267, 618
SatI	GCNGC	5 cut(s)	321, 366, 369, 572, 774
Sau3AI	GATC	2 cut(s)	15, 511
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	333, 334
SfaNI	GCATC	3 cut(s)	13, 424, 790
SfcI	CTRYAG	2 cut(s)	366, 594
SmaI	CCCGGG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	500, 627
SmoI	CTYRAG	2 cut(s)	500, 627
SrfI	GCCCGGGC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	346
SseBI	AGGCCT	1 cut(s)	758
SsiI	CCGC	1 cut(s)	541
SspI	AATATT	2 cut(s)	105, 118
SspMI	CTAG	3 cut(s)	138, 353, 444
StuI	AGGCCT	1 cut(s)	758
StyD4I	CCNGG	2 cut(s)	331, 332
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	1 cut(s)	624
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	97, 692, 717
TasI	AATT	1 cut(s)	346
Tru1I	TTAA	4 cut(s)	101, 113, 267, 618
Tru9I	TTAA	4 cut(s)	101, 113, 267, 618
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	5 cut(s)	320, 365, 368, 571, 773
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	4 cut(s)	138, 290, 602, 836
TspMI	CCCGGG	1 cut(s)	332
TspRI	CASTG	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	1 cut(s)	346
XmaI	CCCGGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	3 cut(s)	138, 353, 444
Zsp2I	ATGCAT	2 cut(s)	6, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.