Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000359.1

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

216911 .. 217890

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000359.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgaaacgaagagaactagagttcatcagtttgttaaatcttgtaggccttatagaatgtggtgggtgttttacgtccattgggaatgtttatcctatgattggaaccgtgggtgtccccctgacaactattgaagcccggcttgagtcggtcccagaactgggatatgatgcactttctagcgtggcacgtggagagattttcctaagaggaaaaaccttgttttctcgttaccacaagcgacaagatctaactgaagaagtccttattgatgggtggttccatacaggtgatattggagaatggcagcctaatggagcaatgaaagttatagacaggaaaaagaacatatttagactgtctcaaggtgaatatgttgctgtcgaaagcattgaaagcaaatacttgcaatgcccccttattacatcgatttgggtttatgggaacagcttcgagtcatttcctgttgctgtggttgttcctgacagaaaagccttggaggactgggcagctgaacatcttttggctgatgactacaaatcattgtgtgaaaacatgaaggcaagaaaatacatttgggatgagctccatagtacgggtcagatacagcaagtatgtgctccatccctgtttcatgctatgttgcttaagtttattcatctgacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

222

Amino Acids

25.19

Weight (kDa)

5.71

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	276
AcvI	CACGTG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	4 cut(s)	101, 160, 161, 595
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	2 cut(s)	134, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	3 cut(s)	450, 512, 586
AluI	AGCT	3 cut(s)	450, 512, 586
Alw21I	GWGCWC	2 cut(s)	588, 622
Alw26I	GTCTC	1 cut(s)	366
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	307, 509
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	302, 380
AvaII	GGWCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	588
BbrPI	CACGTG	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	588, 622
BbvI	GCAGC	2 cut(s)	319, 521
BccI	CCATC	2 cut(s)	266, 631
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	2 cut(s)	17, 180
BfrI	CTTAAG	1 cut(s)	647
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	2 cut(s)	308, 510
BlsI	GCNGC	2 cut(s)	309, 511
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	3 cut(s)	106, 153, 281
BmrFI	CCNGG	1 cut(s)	139
BmrI	ACTGGG	2 cut(s)	170, 514
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	2 cut(s)	170, 514
BpuEI	CTTGAG	2 cut(s)	164, 348
BpuMI	CCSGG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	108, 495
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 160, 161, 595
Bse1I	ACTGG	2 cut(s)	165, 509
Bse3DI	GCAATG	2 cut(s)	327, 416
BseCI	ATCGAT	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	108, 495
BseGI	GGATG	2 cut(s)	586, 623
BseLI	CCNNNNNNNGG	4 cut(s)	101, 160, 161, 595
BseMI	GCAATG	2 cut(s)	327, 416
BseNI	ACTGG	2 cut(s)	165, 509
BseXI	GCAGC	2 cut(s)	319, 521
BshFI	GGCC	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	588, 622
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	2 cut(s)	101, 137
BslI	CCNNNNNNNGG	4 cut(s)	101, 160, 161, 595
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	101, 137
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	588, 622
Bsp143I	GATC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	48
BspDI	ATCGAT	1 cut(s)	428
BspLI	GGNNCC	3 cut(s)	106, 153, 281
BspTI	CTTAAG	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	327, 416
BsrI	ACTGG	2 cut(s)	165, 509
BssECI	CCNNGG	2 cut(s)	108, 495
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	109, 360
Bst6I	CTCTTC	1 cut(s)	4
BstAFI	CTTAAG	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	586, 623
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	319, 521
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	586, 623
Cfr13I	GGNCC	1 cut(s)	151
ClaI	ATCGAT	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	2 cut(s)	556, 635
CviJI	RGCY	9 cut(s)	48, 137, 142, 310, 450, 494, 512, 527, 586
CviKI_1	RGCY	9 cut(s)	48, 137, 142, 310, 450, 494, 512, 527, 586
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	276
Eco72I	CACGTG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	559, 638
FalI	AAGNNNNNCTT	4 cut(s)	126, 158, 249, 281
FaqI	GGGAC	2 cut(s)	101, 137
FatI	CATG	2 cut(s)	555, 634
Fnu4HI	GCNGC	2 cut(s)	308, 510
FokI	GGATG	2 cut(s)	593, 610
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	2 cut(s)	308, 510
FspBI	CTAG	2 cut(s)	17, 180
GluI	GCNGC	2 cut(s)	308, 510
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	2 cut(s)	559, 638
HinfI	GANTC	2 cut(s)	146, 455
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	302, 380
Hpy188I	TCNGA	2 cut(s)	603, 663
Hpy188III	TCNNGA	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	2 cut(s)	109, 360
HpyCH4IV	ACGT	2 cut(s)	74, 190
HpyCH4V	TGCA	2 cut(s)	173, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	74, 190
Hsp92II	CATG	2 cut(s)	559, 638
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	3 cut(s)	317, 591, 625
Lsp1109I	GCAGC	2 cut(s)	319, 521
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	17, 180
MaeII	ACGT	2 cut(s)	74, 190
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	21, 269
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	588, 622
MlyI	GAGTC	2 cut(s)	155, 464
MnlI	CCTC	2 cut(s)	203, 493
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	3 cut(s)	35, 648, 667
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	512
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	559, 638
NlaIV	GGNNCC	3 cut(s)	106, 153, 281
PceI	AGGCCT	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	309, 511
PleI	GAGTC	2 cut(s)	154, 463
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	2 cut(s)	154, 463
Ppu21I	YACGTR	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	588
PspCI	CACGTG	1 cut(s)	191
PspN4I	GGNNCC	3 cut(s)	106, 153, 281
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	35, 648, 667
SatI	GCNGC	2 cut(s)	308, 510
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	155, 464
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	588, 622
SetI	ASST	8 cut(s)	77, 193, 221, 292, 370, 452, 514, 588
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	3 cut(s)	143, 363, 647
SmoI	CTYRAG	3 cut(s)	143, 363, 647
SseBI	AGGCCT	1 cut(s)	48
SspMI	CTAG	2 cut(s)	17, 180
SstI	GAGCTC	1 cut(s)	588
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	109, 360
TaiI	ACGT	2 cut(s)	77, 193
TaqI	TCGA	3 cut(s)	384, 428, 453
TaqII	GACCGA	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	35, 648, 667
Tru9I	TTAA	3 cut(s)	35, 648, 667
TseI	GCWGC	2 cut(s)	307, 509
TspDTI	ATGAA	6 cut(s)	13, 17, 338, 572, 623, 647
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	17, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.