Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16042368 .. 16046432

Gene Structure 4065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATGCAGCCATTCATGTGGGTTCAGCCATCAGAAGCCATGGTGTCAATCCTGTGTATGTGTTATAGAGTTGATGGTAGTGGTAGTGAGAATAGTAACTGTGAAATGGAAAGATATTGTTTTTTTATTTTATATTGTTTCAATGTTTGCCGGGAGATAATTGTGGTATATAACTATATATGGATCAAATTGCCCCCAATGGATTATTGCAATGGAGGTAATAATACTGCCTGTGACAGCCATGCCATTACATATGTTCCCCTTTATGACACCCTTGTTGCAAGTGCTAATGCAGTTGAGTTCATCATCAACCGTGCTGAAGTTTCAATAGCTTTTGTTCAAGAGAACAAAATCCCTGCTATTATATCAATCCTTCCAAACTGTTCTATGCATTTAAAAATAATTGTCAGCTTCACAAATGTTTCTGCCACTCAAAAGAAGGAAGCAGAAGAACTGGGGGAATCTTGCTTTTTGTGGGAGGAATTCCTTCAGTTGGGAAATTCAGATTCTGAACTACGCCCAAAACAGAGGACCGCTGTGTGCACAATAATGTATACAAGTGGAACGACTGGAGAACCAAAGGGCGTAATCGTTACTAATGCAGCATTAATGTCAGAAGAATTGTCAATAGACGATGTCAGGTTTTCACTGGACAACCTTCAGGAATTAAAGCCTACTATGTTTTGTGGGCAAGTTGGCAAATCTGGAGAAGGGTTTGCCACAAGAAAAAGCGGCACCTCTCTTGGACAAGCTTGCCTTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGGATTGTGTTCGTCTTTGTGCCACATCTGAATTTTGTGCTAATTTGGGTTTATGAGAACAGCTTCAAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTAAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACATGAAGGCAAGAAAATACATTTTGGATGAGCTCAATAGTATGGGTCAGAAACAGCATCTTCGAGGGTTTGAGTGGTTAAAAGCAGTTCATTTGGAGCCAAAACCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

363

Amino Acids

40.8

Weight (kDa)

5.37

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	77 - 211	9.2e-18	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	2 cut(s)	534, 732
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	3 cut(s)	482, 499, 844
AcuI	CTGAAG	3 cut(s)	339, 473, 644
AfiI	CCNNNNNNNGG	2 cut(s)	493, 812
AgsI	TTSAA	4 cut(s)	142, 327, 341, 880
AluBI	AGCT	7 cut(s)	332, 411, 752, 768, 876, 938, 1012
AluI	AGCT	7 cut(s)	332, 411, 752, 768, 876, 938, 1012
Alw21I	GWGCWC	2 cut(s)	545, 1014
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	918
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	7, 602, 935
ApoI	RAATTY	3 cut(s)	482, 499, 844
AseI	ATTAAT	1 cut(s)	608
Asp700I	GAANNNNTTC	2 cut(s)	486, 875
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	1014
Bbv12I	GWGCWC	2 cut(s)	545, 1014
BbvI	GCAGC	3 cut(s)	19, 614, 947
BccI	CCATC	2 cut(s)	37, 68
BcnI	CCSGG	1 cut(s)	152
BisI	GCNGC	4 cut(s)	8, 603, 733, 936
BlpI	GCTNAGC	1 cut(s)	939
BlsI	GCNGC	4 cut(s)	9, 604, 734, 937
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	2 cut(s)	736, 1077
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	2 cut(s)	464, 940
BmsI	GCATC	2 cut(s)	952, 1045
BmuI	ACTGGG	2 cut(s)	464, 940
BpmI	CTGGAG	2 cut(s)	591, 726
Bpu1102I	GCTNAGC	1 cut(s)	939
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	39, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 812
Bse1I	ACTGG	4 cut(s)	459, 574, 654, 935
Bse3DI	GCAATG	2 cut(s)	217, 802
BseDI	CCNNGG	2 cut(s)	39, 921
BseGI	GGATG	1 cut(s)	1012
BseLI	CCNNNNNNNGG	2 cut(s)	493, 812
BseMI	GCAATG	2 cut(s)	217, 802
BseNI	ACTGG	4 cut(s)	459, 574, 654, 935
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	19, 614, 947
BshFI	GGCC	1 cut(s)	920
BshNI	GGYRCC	1 cut(s)	734
BsiHKAI	GWGCWC	2 cut(s)	545, 1014
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	493, 812
BsnI	GGCC	1 cut(s)	920
Bsp1286I	GDGCHC	2 cut(s)	545, 1014
Bsp143I	GATC	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	939
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	534, 732
BspANI	GGCC	1 cut(s)	920
BspLI	GGNNCC	2 cut(s)	736, 1077
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	217, 802
BsrI	ACTGG	4 cut(s)	459, 574, 654, 935
BssECI	CCNNGG	2 cut(s)	39, 921
BssMI	GATC	1 cut(s)	183
BssNAI	GTATAC	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	39, 921
Bst1107I	GTATAC	1 cut(s)	555
Bst4CI	ACNGT	3 cut(s)	101, 314, 383
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	939
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	1012
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	545
BstV1I	GCAGC	3 cut(s)	19, 614, 947
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstZ17I	GTATAC	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	920
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	1012
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	754
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	531
CviAII	CATG	4 cut(s)	16, 40, 242, 982
DdeI	CTNAG	1 cut(s)	939
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DraI	TTTAAA	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	1012
Eco130I	CCWWGG	2 cut(s)	39, 921
Eco147I	AGGCCT	1 cut(s)	920
Eco24I	GRGCYC	1 cut(s)	1014
Eco47I	GGWCC	1 cut(s)	531
Eco53kI	GAGCTC	1 cut(s)	1012
Eco57I	CTGAAG	3 cut(s)	339, 473, 644
EcoICRI	GAGCTC	1 cut(s)	1012
EcoRI	GAATTC	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	39, 921
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	1014
ErhI	CCWWGG	2 cut(s)	39, 921
FaeI	CATG	4 cut(s)	19, 43, 245, 985
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FatI	CATG	4 cut(s)	15, 39, 241, 981
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	4 cut(s)	8, 603, 733, 936
FokI	GGATG	1 cut(s)	1019
FriOI	GRGCYC	1 cut(s)	1014
Fsp4HI	GCNGC	4 cut(s)	8, 603, 733, 936
GluI	GCNGC	4 cut(s)	8, 603, 733, 936
GsuI	CTGGAG	2 cut(s)	591, 726
HaeIII	GGCC	1 cut(s)	920
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	4 cut(s)	19, 43, 245, 985
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	2 cut(s)	461, 506
HpaII	CCGG	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	543, 555
Hpy188I	TCNGA	6 cut(s)	34, 505, 511, 616, 843, 1029
Hpy188III	TCNNGA	4 cut(s)	341, 662, 705, 908
Hpy8I	GTNNAC	2 cut(s)	543, 555
HpyAV	CCTTC	6 cut(s)	383, 433, 497, 668, 704, 979
HpyCH4III	ACNGT	3 cut(s)	101, 314, 383
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	7 cut(s)	7, 210, 281, 293, 391, 543, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	774
HpyF3I	CTNAG	1 cut(s)	939
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	4 cut(s)	19, 43, 245, 985
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	1075
Lsp1109I	GCAGC	3 cut(s)	19, 614, 947
LweI	GCATC	2 cut(s)	952, 1045
MaeII	ACGT	1 cut(s)	785
MaeIII	GTNAC	3 cut(s)	95, 233, 592
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	3 cut(s)	461, 629, 1031
MhlI	GDGCHC	2 cut(s)	545, 1014
MluCI	AATT	9 cut(s)	159, 188, 402, 482, 499, 620, 665, 844, 855
MnlI	CCTC	6 cut(s)	209, 472, 522, 748, 919, 1037
Mph1103I	ATGCAT	1 cut(s)	393
MroXI	GAANNNNTTC	2 cut(s)	486, 875
MseI	TTAA	4 cut(s)	395, 608, 668, 1058
MslI	CAYNNNNRTG	2 cut(s)	16, 548
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	774
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	4 cut(s)	19, 43, 245, 985
NlaIV	GGNNCC	2 cut(s)	736, 1077
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	920
PdmI	GAANNNNTTC	2 cut(s)	486, 875
PfeI	GAWTC	2 cut(s)	461, 506
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	9, 604, 734, 937
PshBI	ATTAAT	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	1014
PspN4I	GGNNCC	2 cut(s)	736, 1077
PspPI	GGNCC	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	509
PsyI	GACNNNGTC	1 cut(s)	635
RseI	CAYNNNNRTG	2 cut(s)	16, 548
SacI	GAGCTC	1 cut(s)	1014
SaqAI	TTAA	4 cut(s)	395, 608, 668, 1058
SatI	GCNGC	4 cut(s)	8, 603, 733, 936
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	545, 1014
SfaNI	GCATC	2 cut(s)	952, 1045
SinI	GGWCC	1 cut(s)	531
SmiMI	CAYNNNNRTG	2 cut(s)	16, 548
Sse9I	AATT	9 cut(s)	159, 188, 402, 482, 499, 620, 665, 844, 855
SseBI	AGGCCT	1 cut(s)	920
SsiI	CCGC	2 cut(s)	534, 732
SstI	GAGCTC	1 cut(s)	1014
StuI	AGGCCT	1 cut(s)	920
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	39, 921
TaaI	ACNGT	3 cut(s)	101, 314, 383
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	1 cut(s)	1042
TasI	AATT	9 cut(s)	159, 188, 402, 482, 499, 620, 665, 844, 855
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	2 cut(s)	461, 506
Tru1I	TTAA	4 cut(s)	395, 608, 668, 1058
Tru9I	TTAA	4 cut(s)	395, 608, 668, 1058
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	7, 602, 935
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	4, 292, 998, 1058
TspRI	CASTG	1 cut(s)	654
Tth111I	GACNNNGTC	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	531
VspI	ATTAAT	1 cut(s)	608
XapI	RAATTY	3 cut(s)	482, 499, 844
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	2 cut(s)	486, 875
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.