Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

21390887 .. 21419928

Gene Structure 29042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG135400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGCTATCTATCCAGAGGTGATATTGGGGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCACGGTGAATACTTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTATCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACCTGAAGGCAAGAAAATACATTTTGGATGAGCTGAATAGTATGGGTCGGAAACAACAACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCAACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGACCAAGTTGAAAAACTTTATAGTGAAGCAAAGGGTGGAGAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

169

Amino Acids

19.65

Weight (kDa)

7.73

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	125, 427, 473
AluBI	AGCT	3 cut(s)	180, 242, 316
AluI	AGCT	3 cut(s)	180, 242, 316
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	37, 239
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	32, 110
AvaII	GGWCC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	49, 251
BcoDI	GTCTC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	38, 240
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	2 cut(s)	39, 241
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	244
Bpu1102I	GCTNAGC	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	2 cut(s)	57, 146
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	316
BseMI	GCAATG	2 cut(s)	57, 146
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	49, 251
BshFI	GGCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	406
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	414
BsrDI	GCAATG	2 cut(s)	57, 146
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	90, 98
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	49, 251
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	316
CciI	TCATGA	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	158
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	6 cut(s)	6, 40, 180, 224, 242, 316
CviKI_1	RGCY	6 cut(s)	6, 40, 180, 224, 242, 316
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
DraI	TTTAAA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	415
FaiI	YATR	8 cut(s)	62, 80, 171, 326, 398, 413, 483, 508
FatI	CATG	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	38, 240
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	38, 240
GluI	GCNGC	2 cut(s)	38, 240
HaeIII	GGCC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	415
HinfI	GANTC	2 cut(s)	185, 415
HphI	GGTGA	2 cut(s)	32, 110
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	3 cut(s)	15, 212, 412
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	2 cut(s)	90, 98
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	28, 52, 220, 225, 299
Lsp1109I	GCAGC	2 cut(s)	49, 251
LweI	GCATC	1 cut(s)	256
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	194, 409
MmeI	TCCRAC	2 cut(s)	311, 443
MnlI	CCTC	4 cut(s)	11, 223, 341, 396
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	2 cut(s)	84, 362
MspA1I	CMGCKG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	381
PagI	TCATGA	1 cut(s)	411
PceI	AGGCCT	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	39, 241
PleI	GAGTC	2 cut(s)	193, 409
PpsI	GAGTC	2 cut(s)	193, 409
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	84, 362
SatI	GCNGC	2 cut(s)	38, 240
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	2 cut(s)	194, 409
SetI	ASST	5 cut(s)	22, 182, 244, 288, 318
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	1 cut(s)	443
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	440
SspI	AATATT	1 cut(s)	455
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	90, 98
TaqI	TCGA	3 cut(s)	158, 183, 346
TasI	AATT	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	84, 362
Tru9I	TTAA	2 cut(s)	84, 362
TseI	GCWGC	2 cut(s)	37, 239
TspDTI	ATGAA	2 cut(s)	68, 362
VpaK11BI	GGWCC	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.