Rmu_sc0003487.1_g000007

decanoate-CoA ligase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003487.1
OG0000225
Physical Location & Seq
Forward (+)
42008 .. 43574
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003487.1_g000007.1.cds

Sequence Viewer

Length: 531 bp
atgtggaggaattttttagggtcaccagctgcagcactttatcacaaggatatgatttgggtttatgagaacagcttcaagtcatttcttgttgctgtggttgttcctgacagaaaggccttggaggactgggcagctaatcatcatttgactgatgactacaaatcattgtgtcaaaacatgaaggcaagaaaatacattttggatgagctcaataggctaaaaaaccccagcctaaatagaggcccaatagggcagccccaaagaggcaaggcccaatccatggcccatcaatactggaatgattcaagcccaagacgtcatcacgccctcacatcaggagatgacaccgcagccagacctcgccgtgactcgtaccgccacatcccatgctgcctcagcctccgcgactcgtaccaccacgctgtcatggtaccacgccacctcgacctaagcaaaccggcccgcaccactatgaaccaacgacgatgcagcgcaccagatcattgcctccacgagccaaacctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920
Pfam Domains
Protein Families
AMP-binding

Protein Analysis

176

Amino Acids

20.41

Weight (kDa)

9.53

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 283
AccII CGCG 1 cut(s) 408
AciI CCGC 4 cut(s) 351, 379, 406, 466
AcsI RAATTY 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 3 cut(s) 377, 416, 435
AfiI CCNNNNNNNGG 2 cut(s) 266, 283
AgsI TTSAA 2 cut(s) 79, 309
AluBI AGCT 4 cut(s) 29, 75, 137, 211
AluI AGCT 4 cut(s) 29, 75, 137, 211
Alw21I GWGCWC 1 cut(s) 213
AoxI GGCC 5 cut(s) 117, 244, 273, 285, 462
ApeKI GCWGC 7 cut(s) 29, 32, 134, 256, 353, 393, 492
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 433
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 4 cut(s) 245, 274, 286, 463
AsuHPI GGTGA 1 cut(s) 15
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 213
BauI CACGAG 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 7 cut(s) 16, 44, 146, 268, 365, 380, 504
BccI CCATC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 7 cut(s) 30, 33, 135, 257, 354, 394, 493
BlsI GCNGC 7 cut(s) 31, 34, 136, 258, 355, 395, 494
BmgT120I GGNCC 4 cut(s) 245, 274, 286, 463
BmiI GGNNCC 1 cut(s) 435
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 139
Bpu10I CCTNAGC 2 cut(s) 398, 452
BsaHI GRCGYC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 120, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 283
Bse118I RCCGGY 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 134, 302
Bse3DI GCAATG 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 120, 282
BseGI GGATG 2 cut(s) 211, 384
BseLI CCNNNNNNNGG 2 cut(s) 266, 283
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 412
BseNI ACTGG 2 cut(s) 134, 302
BseXI GCAGC 7 cut(s) 16, 44, 146, 268, 365, 380, 504
BseYI CCCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 5 cut(s) 119, 246, 275, 287, 464
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 2 cut(s) 266, 283
BsnI GGCC 5 cut(s) 119, 246, 275, 287, 464
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 502
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 4 cut(s) 351, 379, 406, 466
BspANI GGCC 5 cut(s) 119, 246, 275, 287, 464
BspCNI CTCAG 1 cut(s) 411
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 460
BsrI ACTGG 2 cut(s) 134, 302
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 120, 282
BssMI GATC 1 cut(s) 502
BssNI GRCGYC 1 cut(s) 319
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 2 cut(s) 120, 282
Bst2BI CACGAG 1 cut(s) 515
BstACI GRCGYC 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 398, 452
BstDSI CCRYGG 1 cut(s) 282
BstEII GGTNACC 1 cut(s) 21
BstF5I GGATG 2 cut(s) 211, 384
BstFNI CGCG 1 cut(s) 408
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 1 cut(s) 505
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 2 cut(s) 217, 399
BstPI GGTNACC 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 7 cut(s) 16, 44, 146, 268, 365, 380, 504
BsuRI GGCC 5 cut(s) 119, 246, 275, 287, 464
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 211, 384
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 4 cut(s) 245, 274, 286, 463
Csp6I GTAC 3 cut(s) 376, 415, 434
CviAII CATG 4 cut(s) 181, 283, 390, 430
CviQI GTAC 3 cut(s) 376, 415, 434
DdeI CTNAG 2 cut(s) 398, 452
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 120, 282
Eco147I AGGCCT 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco91I GGTNACC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 120, 282
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 120, 282
FaeI CATG 4 cut(s) 184, 286, 393, 433
FaiI YATR 7 cut(s) 53, 66, 182, 284, 391, 431, 476
FatI CATG 4 cut(s) 180, 282, 389, 429
FauI CCCGC 1 cut(s) 473
Fnu4HI GCNGC 7 cut(s) 30, 33, 135, 257, 354, 394, 493
FokI GGATG 2 cut(s) 218, 371
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 7 cut(s) 30, 33, 135, 257, 354, 394, 493
GlaI GCGC 1 cut(s) 496
GluI GCNGC 7 cut(s) 30, 33, 135, 257, 354, 394, 493
GsaI CCCAGC 1 cut(s) 234
HaeIII GGCC 5 cut(s) 119, 246, 275, 287, 464
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 4 cut(s) 184, 286, 393, 433
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HinfI GANTC 3 cut(s) 305, 371, 410
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 2 cut(s) 107, 339
Hpy99I CGWCG 1 cut(s) 489
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 32, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 399
HpyF3I CTNAG 2 cut(s) 398, 452
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 4 cut(s) 184, 286, 393, 433
HspAI GCGC 1 cut(s) 495
KpnI GGTACC 1 cut(s) 437
Kzo9I GATC 1 cut(s) 502
LpnPI CCDG 9 cut(s) 39, 115, 120, 244, 283, 324, 370, 474, 513
Lsp1109I GCAGC 7 cut(s) 16, 44, 146, 268, 365, 380, 504
LweI GCATC 1 cut(s) 479
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 21, 368
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 10
MlyI GAGTC 2 cut(s) 365, 404
MnlI CCTC 9 cut(s) 118, 236, 260, 341, 372, 407, 413, 455, 521
MroXI GAANNNNTTC 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 217, 399
NcoI CCATGG 1 cut(s) 282
NdeII GATC 1 cut(s) 502
NlaIII CATG 4 cut(s) 184, 286, 393, 433
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 2 cut(s) 21, 368
PceI AGGCCT 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 7 cut(s) 31, 34, 136, 258, 355, 395, 494
PleI GAGTC 2 cut(s) 365, 404
PpsI GAGTC 2 cut(s) 365, 404
Psp124BI GAGCTC 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 4 cut(s) 245, 274, 286, 463
PstI CTGCAG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 3 cut(s) 377, 416, 435
RsaNI GTAC 3 cut(s) 376, 415, 434
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 213
SatI GCNGC 7 cut(s) 30, 33, 135, 257, 354, 394, 493
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 4 cut(s) 245, 274, 286, 463
SchI GAGTC 2 cut(s) 365, 404
SduI GDGCHC 1 cut(s) 213
SetI ASST 9 cut(s) 31, 77, 139, 213, 322, 364, 447, 453, 528
SfaNI GCATC 1 cut(s) 479
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 1 cut(s) 10
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 4 cut(s) 351, 379, 406, 466
SstI GAGCTC 1 cut(s) 213
StuI AGGCCT 1 cut(s) 119
StyI CCWWGG 2 cut(s) 120, 282
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 447
TasI AATT 1 cut(s) 10
TfiI GAWTC 1 cut(s) 305
TseFI GTSAC 2 cut(s) 21, 368
TseI GCWGC 7 cut(s) 29, 32, 134, 256, 353, 393, 492
Tsp45I GTSAC 2 cut(s) 21, 368
TspDTI ATGAA 2 cut(s) 197, 491
Van91I CCANNNNNTGG 1 cut(s) 283
XapI RAATTY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 74
ZraI GACGTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.