Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

20639021 .. 20653184

Gene Structure 14164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG159000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACAGCCCCCGCAAAAGCCCAAATTTGGCAAAGACACCCGAGAAAAGTGCCATTGAAGGGAAAGCACTTCACATTTCATCGCGGTCTGGCCTTACTGAAAGCTGTGGTGGGTGTTTTACGCCCCTTGGCAATGTTCATCCTATGATTGGAACTGTTGGTGCTCCCCTGACAACTGTTGAAGCGCGGCTTGGGTCGGTCCCAGAACTGGGATATGATGCATCTTCTAGTGTGCCATGTAGAGAGATTTTCCTAAGAGGAAAAAACCTTGTTTTCATTGAACGTGCAAATATTAAACTGAACGAAGAGAAAAGTGCACGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

108

Amino Acids

11.52

Weight (kDa)

9.18

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	85, 187
AciI	CCGC	3 cut(s)	13, 85, 187
AcsI	RAATTY	1 cut(s)	25
AfiI	CCNNNNNNNGG	5 cut(s)	28, 60, 149, 208, 209
AgsI	TTSAA	3 cut(s)	59, 182, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw21I	GWGCWC	2 cut(s)	166, 319
Alw44I	GTGCAC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	319
Bbv12I	GWGCWC	2 cut(s)	166, 319
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	208, 230
BmuI	ACTGGG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 60, 149, 208, 209
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	5 cut(s)	28, 60, 149, 208, 209
BseMI	GCAATG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	85, 187
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	166, 319
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	5 cut(s)	28, 60, 149, 208, 209
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	166, 319
BspACI	CCGC	3 cut(s)	13, 85, 187
BspANI	GGCC	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	85, 187
BspLI	GGNNCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	157, 178
Bst6I	CTCTTC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	85, 187
BstHHI	GCGC	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	319
BstUI	CGCG	2 cut(s)	85, 187
BsuRI	GGCC	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	199
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	5 cut(s)	9, 21, 93, 105, 190
CviKI_1	RGCY	5 cut(s)	9, 21, 93, 105, 190
DdeI	CTNAG	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	240
FaiI	YATR	3 cut(s)	146, 216, 238
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	236
FauI	CCCGC	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	157, 178
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	221, 287, 317
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	4 cut(s)	75, 182, 194, 216
LweI	GCATC	2 cut(s)	208, 230
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	283
MboII	GAAGA	2 cut(s)	216, 317
MhlI	GDGCHC	2 cut(s)	166, 319
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	223
MseI	TTAA	1 cut(s)	294
MvnI	CGCG	2 cut(s)	85, 187
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	201
NsiI	ATGCAT	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	166, 319
SetI	ASST	3 cut(s)	107, 270, 286
SfaNI	GCATC	2 cut(s)	208, 230
SinI	GGWCC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	13, 85, 187
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	157, 178
TaiI	ACGT	1 cut(s)	286
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	25
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	69, 128, 265
VneI	GTGCAC	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	25
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.