Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16756989 .. 16844723

Gene Structure 87735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG107900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTGTCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTATTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACATGAAGGCAAGAAAATACATTTTAGATGAGCTCACTAGTATGGCTCAGAAACAGCAACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTACATTTGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

111

Amino Acids

12.79

Weight (kDa)

7.74

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	24 - 65	7.1e-06	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	74
AhlI	ACTAGT	1 cut(s)	269
AluBI	AGCT	4 cut(s)	129, 191, 265, 333
AluI	AGCT	4 cut(s)	129, 191, 265, 333
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	1 cut(s)	189
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	183, 293
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1720I	GCTNAGC	1 cut(s)	192
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	184, 292
BspDI	ATCGAT	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	192, 279
BstMAI	GTCTC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	173
BsuTUI	ATCGAT	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	107
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	6 cut(s)	129, 173, 191, 265, 278, 333
CviKI_1	RGCY	6 cut(s)	129, 173, 191, 265, 278, 333
DdeI	CTNAG	2 cut(s)	192, 279
DraI	TTTAAA	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	238
FaiI	YATR	6 cut(s)	11, 29, 54, 120, 236, 275
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	238
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	192, 279
Hsp92II	CATG	1 cut(s)	238
LpnPI	CCDG	2 cut(s)	169, 174
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	100, 319
MhlI	GDGCHC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	2 cut(s)	172, 290
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	33, 311
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	33, 311
SatI	GCNGC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	5 cut(s)	49, 131, 193, 267, 335
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
SpeI	ACTAGT	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	107, 132, 295
Tru1I	TTAA	2 cut(s)	33, 311
Tru9I	TTAA	2 cut(s)	33, 311
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	17, 251
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.