acyl-CoA synthetase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AMP-binding | PF00501 | 53 - 484 | 2.3e-82 | AMP-binding enzyme |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1056 |
| Acc65I | GGTACC | 1 cut(s) | 915 |
| AccB1I | GGYRCC | 1 cut(s) | 915 |
| AccII | CGCG | 2 cut(s) | 14, 201 |
| AciI | CCGC | 7 cut(s) | 12, 14, 56, 696, 960, 1392, 1815 |
| AclWI | GGATC | 5 cut(s) | 245, 286, 299, 392, 1540 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AcsI | RAATTY | 3 cut(s) | 431, 523, 1429 |
| AcvI | CACGTG | 1 cut(s) | 234 |
| AcyI | GRCGYC | 1 cut(s) | 1383 |
| AfaI | GTAC | 6 cut(s) | 562, 689, 824, 917, 1365, 1695 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 71, 451, 1373 |
| AflIII | ACRYGT | 2 cut(s) | 199, 231 |
| AgeI | ACCGGT | 1 cut(s) | 76 |
| AjiI | CACGTC | 1 cut(s) | 1399 |
| AjnI | CCWGG | 1 cut(s) | 750 |
| AleI | CACNNNNGTG | 2 cut(s) | 318, 392 |
| Alw21I | GWGCWC | 1 cut(s) | 1165 |
| Alw26I | GTCTC | 2 cut(s) | 559, 1581 |
| AlwI | GGATC | 5 cut(s) | 245, 286, 299, 392, 1540 |
| Ama87I | CYCGRG | 1 cut(s) | 556 |
| AoxI | GGCC | 6 cut(s) | 44, 69, 106, 193, 366, 1925 |
| ApeKI | GCWGC | 3 cut(s) | 263, 737, 1184 |
| ApoI | RAATTY | 3 cut(s) | 431, 523, 1429 |
| AsiGI | ACCGGT | 1 cut(s) | 76 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 614, 1565 |
| Asp718I | GGTACC | 1 cut(s) | 915 |
| AspLEI | GCGC | 2 cut(s) | 256, 1189 |
| AspS9I | GGNCC | 5 cut(s) | 74, 193, 224, 748, 1986 |
| AsuC2I | CCSGG | 1 cut(s) | 309 |
| AsuHPI | GGTGA | 2 cut(s) | 379, 1595 |
| AsuII | TTCGAA | 2 cut(s) | 521, 1755 |
| AvaI | CYCGRG | 1 cut(s) | 556 |
| AvaII | GGWCC | 4 cut(s) | 74, 224, 748, 1986 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 886, 919 |
| BanI | GGYRCC | 1 cut(s) | 915 |
| BanII | GRGCYC | 1 cut(s) | 1165 |
| BauI | CACGAG | 2 cut(s) | 802, 969 |
| BbrPI | CACGTG | 1 cut(s) | 234 |
| BbsI | GAAGAC | 2 cut(s) | 485, 536 |
| Bbv12I | GWGCWC | 1 cut(s) | 1165 |
| BbvI | GCAGC | 3 cut(s) | 250, 749, 1196 |
| BccI | CCATC | 7 cut(s) | 73, 98, 916, 1366, 1481, 1485, 1523 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 726, 760, 1648, 1682 |
| BciT130I | CCWGG | 1 cut(s) | 752 |
| BciVI | GTATCC | 1 cut(s) | 887 |
| BclI | TGATCA | 3 cut(s) | 847, 1471, 1960 |
| BcnI | CCSGG | 1 cut(s) | 309 |
| BcoDI | GTCTC | 2 cut(s) | 559, 1581 |
| BfaI | CTAG | 5 cut(s) | 461, 876, 1017, 1115, 1355 |
| BfoI | RGCGCY | 1 cut(s) | 1190 |
| BfuI | GTATCC | 1 cut(s) | 887 |
| BglII | AGATCT | 2 cut(s) | 1462, 1894 |
| BisI | GCNGC | 4 cut(s) | 12, 264, 738, 1185 |
| BlsI | GCNGC | 4 cut(s) | 13, 265, 739, 1186 |
| Bme1390I | CCNGG | 2 cut(s) | 309, 752 |
| Bme18I | GGWCC | 4 cut(s) | 74, 224, 748, 1986 |
| BmeT110I | CYCGRG | 1 cut(s) | 556 |
| BmgBI | CACGTC | 1 cut(s) | 1399 |
| BmgT120I | GGNCC | 5 cut(s) | 74, 193, 224, 748, 1986 |
| BmiI | GGNNCC | 3 cut(s) | 883, 917, 1496 |
| BmrFI | CCNGG | 2 cut(s) | 309, 752 |
| BpiI | GAAGAC | 2 cut(s) | 485, 536 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1793, 1825 |
| BpmI | CTGGAG | 1 cut(s) | 726 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1291 |
| Bpu14I | TTCGAA | 2 cut(s) | 521, 1755 |
| BpuEI | CTTGAG | 5 cut(s) | 1077, 1230, 1237, 1563, 1606 |
| BpuMI | CCSGG | 1 cut(s) | 309 |
| Bsa29I | ATCGAT | 5 cut(s) | 85, 491, 790, 1485, 1548 |
| BsaAI | YACGTR | 2 cut(s) | 234, 394 |
| BsaHI | GRCGYC | 1 cut(s) | 1383 |
| BsaJI | CCNNGG | 7 cut(s) | 12, 140, 295, 379, 450, 1338, 1989 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1920, 1950 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 71, 451, 1373 |
| Bse118I | RCCGGY | 2 cut(s) | 76, 992 |
| Bse1I | ACTGG | 2 cut(s) | 709, 902 |
| Bse3DI | GCAATG | 3 cut(s) | 366, 838, 1635 |
| BseBI | CCWGG | 1 cut(s) | 752 |
| BseCI | ATCGAT | 5 cut(s) | 85, 491, 790, 1485, 1548 |
| BseDI | CCNNGG | 7 cut(s) | 12, 140, 295, 379, 450, 1338, 1989 |
| BseGI | GGATG | 5 cut(s) | 61, 518, 931, 1496, 1804 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 71, 451, 1373 |
| BseMI | GCAATG | 3 cut(s) | 366, 838, 1635 |
| BseMII | CTCAG | 2 cut(s) | 1254, 1655 |
| BseNI | ACTGG | 2 cut(s) | 709, 902 |
| BseRI | GAGGAG | 6 cut(s) | 101, 874, 1098, 1223, 1422, 1925 |
| BseX3I | CGGCCG | 1 cut(s) | 69 |
| BseXI | GCAGC | 3 cut(s) | 250, 749, 1196 |
| BsgI | GTGCAG | 1 cut(s) | 661 |
| Bsh1236I | CGCG | 2 cut(s) | 14, 201 |
| Bsh1285I | CGRYCG | 2 cut(s) | 72, 794 |
| BshFI | GGCC | 6 cut(s) | 46, 71, 108, 195, 368, 1927 |
| BshNI | GGYRCC | 1 cut(s) | 915 |
| BshTI | ACCGGT | 1 cut(s) | 76 |
| BshVI | ATCGAT | 5 cut(s) | 85, 491, 790, 1485, 1548 |
| BsiEI | CGRYCG | 2 cut(s) | 72, 794 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1165 |
| BsiHKCI | CYCGRG | 1 cut(s) | 556 |
| BsiSI | CCGG | 5 cut(s) | 72, 77, 308, 993, 1296 |
| BslFI | GGGAC | 4 cut(s) | 324, 712, 1330, 1614 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 71, 451, 1373 |
| BsmAI | GTCTC | 2 cut(s) | 559, 1581 |
| BsmFI | GGGAC | 4 cut(s) | 324, 712, 1330, 1614 |
| BsnI | GGCC | 6 cut(s) | 46, 71, 108, 195, 368, 1927 |
| BsoBI | CYCGRG | 1 cut(s) | 556 |
| Bsp119I | TTCGAA | 2 cut(s) | 521, 1755 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1165 |
| Bsp1407I | TGTACA | 1 cut(s) | 687 |
| Bsp19I | CCATGG | 1 cut(s) | 1989 |
| BspACI | CCGC | 7 cut(s) | 12, 14, 56, 696, 960, 1392, 1815 |
| BspANI | GGCC | 6 cut(s) | 46, 71, 108, 195, 368, 1927 |
| BspCNI | CTCAG | 2 cut(s) | 1255, 1654 |
| BspDI | ATCGAT | 5 cut(s) | 85, 491, 790, 1485, 1548 |
| BspFNI | CGCG | 2 cut(s) | 14, 201 |
| BspLI | GGNNCC | 3 cut(s) | 883, 917, 1496 |
| BspPI | GGATC | 5 cut(s) | 245, 286, 299, 392, 1540 |
| BspQI | GCTCTTC | 1 cut(s) | 1153 |
| BspT104I | TTCGAA | 2 cut(s) | 521, 1755 |
| BspT107I | GGYRCC | 1 cut(s) | 915 |
| BsrDI | GCAATG | 3 cut(s) | 366, 838, 1635 |
| BsrFI | RCCGGY | 2 cut(s) | 76, 992 |
| BsrGI | TGTACA | 1 cut(s) | 687 |
| BsrI | ACTGG | 2 cut(s) | 709, 902 |
| BssAI | RCCGGY | 2 cut(s) | 76, 992 |
| BssECI | CCNNGG | 7 cut(s) | 12, 140, 295, 379, 450, 1338, 1989 |
| BssNI | GRCGYC | 1 cut(s) | 1383 |
| BssSI | CACGAG | 2 cut(s) | 802, 969 |
| BssT1I | CCWWGG | 3 cut(s) | 140, 379, 1989 |
| Bst2BI | CACGAG | 2 cut(s) | 802, 969 |
| Bst2UI | CCWGG | 1 cut(s) | 752 |
| Bst4CI | ACNGT | 6 cut(s) | 317, 484, 952, 1041, 1321, 1342 |
| Bst6I | CTCTTC | 1 cut(s) | 1153 |
| BstACI | GRCGYC | 1 cut(s) | 1383 |
| BstAUI | TGTACA | 1 cut(s) | 687 |
| BstBAI | YACGTR | 2 cut(s) | 234, 394 |
| BstBI | TTCGAA | 2 cut(s) | 521, 1755 |
| BstC8I | GCNNGC | 2 cut(s) | 48, 370 |
| BstDEI | CTNAG | 7 cut(s) | 216, 579, 634, 1263, 1291, 1421, 1641 |
| BstDSI | CCRYGG | 3 cut(s) | 12, 1338, 1989 |
| BstEII | GGTNACC | 1 cut(s) | 1445 |
| BstF5I | GGATG | 5 cut(s) | 61, 518, 931, 1496, 1804 |
| BstFNI | CGCG | 2 cut(s) | 14, 201 |
| BstH2I | RGCGCY | 1 cut(s) | 1190 |
| BstHHI | GCGC | 2 cut(s) | 256, 1189 |
| BstMAI | GTCTC | 2 cut(s) | 559, 1581 |
| BstMCI | CGRYCG | 2 cut(s) | 72, 794 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 260, 365, 1029, 1391, 1924 |
| BstNI | CCWGG | 1 cut(s) | 752 |
| BstPI | GGTNACC | 1 cut(s) | 1445 |
| BstSCI | CCNGG | 2 cut(s) | 307, 750 |
| BstUI | CGCG | 2 cut(s) | 14, 201 |
| BstV1I | GCAGC | 3 cut(s) | 250, 749, 1196 |
| BstV2I | GAAGAC | 2 cut(s) | 485, 536 |
| BstX2I | RGATCY | 2 cut(s) | 1462, 1894 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 234 |
| BstYI | RGATCY | 2 cut(s) | 1462, 1894 |
| BstZI | CGGCCG | 1 cut(s) | 69 |
| Bsu15I | ATCGAT | 5 cut(s) | 85, 491, 790, 1485, 1548 |
| BsuI | GTATCC | 1 cut(s) | 887 |
| BsuRI | GGCC | 6 cut(s) | 46, 71, 108, 195, 368, 1927 |
| BsuTUI | ATCGAT | 5 cut(s) | 85, 491, 790, 1485, 1548 |
| BtgI | CCRYGG | 3 cut(s) | 12, 1338, 1989 |
| BtgZI | GCGATG | 1 cut(s) | 822 |
| BtrI | CACGTC | 1 cut(s) | 1399 |
| BtsCI | GGATG | 5 cut(s) | 61, 518, 931, 1496, 1804 |
| BtsIMutI | CAGTG | 3 cut(s) | 313, 783, 1326 |
| Cac8I | GCNNGC | 2 cut(s) | 48, 370 |
| CfoI | GCGC | 2 cut(s) | 256, 1189 |
| Cfr10I | RCCGGY | 2 cut(s) | 76, 992 |
| Cfr13I | GGNCC | 5 cut(s) | 74, 193, 224, 748, 1986 |
| Cfr42I | CCGCGG | 1 cut(s) | 15 |
| ClaI | ATCGAT | 5 cut(s) | 85, 491, 790, 1485, 1548 |
| CpoI | CGGWCCG | 1 cut(s) | 74 |
| CseI | GACGC | 2 cut(s) | 269, 1391 |
| Csp6I | GTAC | 6 cut(s) | 561, 688, 823, 916, 1364, 1694 |
| CspAI | ACCGGT | 1 cut(s) | 76 |
| CspI | CGGWCCG | 1 cut(s) | 74 |
| CviAII | CATG | 5 cut(s) | 373, 606, 856, 1202, 1990 |
| CviQI | GTAC | 6 cut(s) | 561, 688, 823, 916, 1364, 1694 |
| DdeI | CTNAG | 7 cut(s) | 216, 579, 634, 1263, 1291, 1421, 1641 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| EagI | CGGCCG | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 1 cut(s) | 1153 |
| EarI | CTCTTC | 1 cut(s) | 1153 |
| Ecl136II | GAGCTC | 1 cut(s) | 1163 |
| EclXI | CGGCCG | 1 cut(s) | 69 |
| Eco130I | CCWWGG | 3 cut(s) | 140, 379, 1989 |
| Eco147I | AGGCCT | 1 cut(s) | 368 |
| Eco24I | GRGCYC | 1 cut(s) | 1165 |
| Eco47I | GGWCC | 4 cut(s) | 74, 224, 748, 1986 |
| Eco52I | CGGCCG | 1 cut(s) | 69 |
| Eco53kI | GAGCTC | 1 cut(s) | 1163 |
| Eco72I | CACGTG | 1 cut(s) | 234 |
| Eco88I | CYCGRG | 1 cut(s) | 556 |
| Eco91I | GGTNACC | 1 cut(s) | 1445 |
| EcoICRI | GAGCTC | 1 cut(s) | 1163 |
| EcoO65I | GGTNACC | 1 cut(s) | 1445 |
| EcoRI | GAATTC | 1 cut(s) | 431 |
| EcoRII | CCWGG | 1 cut(s) | 750 |
| EcoT14I | CCWWGG | 3 cut(s) | 140, 379, 1989 |
| EcoT38I | GRGCYC | 1 cut(s) | 1165 |
| ErhI | CCWWGG | 3 cut(s) | 140, 379, 1989 |
| FaeI | CATG | 5 cut(s) | 376, 609, 859, 1205, 1993 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1550, 1582 |
| FaqI | GGGAC | 4 cut(s) | 324, 712, 1330, 1614 |
| FatI | CATG | 5 cut(s) | 372, 605, 855, 1201, 1989 |
| FauI | CCCGC | 1 cut(s) | 689 |
| FauNDI | CATATG | 1 cut(s) | 1167 |
| FbaI | TGATCA | 3 cut(s) | 847, 1471, 1960 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 264, 738, 1185 |
| FokI | GGATG | 5 cut(s) | 48, 525, 938, 1503, 1811 |
| FriOI | GRGCYC | 1 cut(s) | 1165 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 264, 738, 1185 |
| FspBI | CTAG | 5 cut(s) | 461, 876, 1017, 1115, 1355 |
| GlaI | GCGC | 2 cut(s) | 255, 1188 |
| GluI | GCNGC | 4 cut(s) | 12, 264, 738, 1185 |
| GsuI | CTGGAG | 1 cut(s) | 726 |
| HaeII | RGCGCY | 1 cut(s) | 1190 |
| HaeIII | GGCC | 6 cut(s) | 46, 71, 108, 195, 368, 1927 |
| HapII | CCGG | 5 cut(s) | 72, 77, 308, 993, 1296 |
| HgaI | GACGC | 2 cut(s) | 269, 1391 |
| HhaI | GCGC | 2 cut(s) | 256, 1189 |
| Hin1I | GRCGYC | 1 cut(s) | 1383 |
| Hin1II | CATG | 5 cut(s) | 376, 609, 859, 1205, 1993 |
| Hin6I | GCGC | 2 cut(s) | 254, 1187 |
| HinP1I | GCGC | 2 cut(s) | 254, 1187 |
| HindIII | AAGCTT | 2 cut(s) | 1101, 1279 |
| HinfI | GANTC | 7 cut(s) | 134, 212, 407, 1086, 1221, 1670, 1757 |
| HpaII | CCGG | 5 cut(s) | 72, 77, 308, 993, 1296 |
| HphI | GGTGA | 2 cut(s) | 379, 1595 |
| Hpy166II | GTNNAC | 4 cut(s) | 421, 563, 690, 976 |
| Hpy188I | TCNGA | 5 cut(s) | 177, 273, 290, 1644, 1975 |
| Hpy8I | GTNNAC | 4 cut(s) | 421, 563, 690, 976 |
| Hpy99I | CGWCG | 2 cut(s) | 263, 1385 |
| HpyAV | CCTTC | 2 cut(s) | 32, 36 |
| HpyCH4III | ACNGT | 6 cut(s) | 317, 484, 952, 1041, 1321, 1342 |
| HpyCH4IV | ACGT | 3 cut(s) | 233, 393, 1398 |
| HpyCH4V | TGCA | 5 cut(s) | 266, 359, 372, 678, 1003 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 260, 365, 1029, 1391, 1924 |
| HpyF3I | CTNAG | 7 cut(s) | 216, 579, 634, 1263, 1291, 1421, 1641 |
| HpySE526I | ACGT | 3 cut(s) | 233, 393, 1398 |
| Hsp92I | GRCGYC | 1 cut(s) | 1383 |
| Hsp92II | CATG | 5 cut(s) | 376, 609, 859, 1205, 1993 |
| HspAI | GCGC | 2 cut(s) | 254, 1187 |
| KpnI | GGTACC | 1 cut(s) | 919 |
| Ksp22I | TGATCA | 3 cut(s) | 847, 1471, 1960 |
| KspI | CCGCGG | 1 cut(s) | 15 |
| LguI | GCTCTTC | 1 cut(s) | 1153 |
| LmnI | GCTCC | 4 cut(s) | 332, 887, 1181, 1938 |
| Lsp1109I | GCAGC | 3 cut(s) | 250, 749, 1196 |
| MaeI | CTAG | 5 cut(s) | 461, 876, 1017, 1115, 1355 |
| MaeII | ACGT | 3 cut(s) | 233, 393, 1398 |
| MaeIII | GTNAC | 5 cut(s) | 202, 781, 797, 1376, 1445 |
| MflI | RGATCY | 2 cut(s) | 1462, 1894 |
| MhlI | GDGCHC | 1 cut(s) | 1165 |
| MluCI | AATT | 8 cut(s) | 267, 337, 431, 523, 741, 1064, 1429, 1732 |
| MluI | ACGCGT | 1 cut(s) | 199 |
| MlyI | GAGTC | 1 cut(s) | 1679 |
| MmeI | TCCRAC | 3 cut(s) | 871, 1931, 1963 |
| MroXI | GAANNNNTTC | 2 cut(s) | 614, 1565 |
| MseI | TTAA | 5 cut(s) | 728, 942, 1806, 1833, 1850 |
| MslI | CAYNNNNRTG | 5 cut(s) | 232, 318, 392, 683, 843 |
| MspA1I | CMGCKG | 3 cut(s) | 14, 56, 1394 |
| MspI | CCGG | 5 cut(s) | 72, 77, 308, 993, 1296 |
| MspR9I | CCNGG | 2 cut(s) | 309, 752 |
| MvaI | CCWGG | 1 cut(s) | 752 |
| MvnI | CGCG | 2 cut(s) | 14, 201 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 260, 365, 1029, 1391, 1924 |
| NciI | CCSGG | 1 cut(s) | 309 |
| NcoI | CCATGG | 1 cut(s) | 1989 |
| NdeI | CATATG | 1 cut(s) | 1167 |
| NlaIII | CATG | 5 cut(s) | 376, 609, 859, 1205, 1993 |
| NlaIV | GGNNCC | 3 cut(s) | 883, 917, 1496 |
| NmeAIII | GCCGAG | 3 cut(s) | 320, 475, 1428 |
| NmuCI | GTSAC | 2 cut(s) | 781, 797 |
| NspV | TTCGAA | 2 cut(s) | 521, 1755 |
| OliI | CACNNNNGTG | 2 cut(s) | 318, 392 |
| PaeR7I | CTCGAG | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 368 |
| PciSI | GCTCTTC | 1 cut(s) | 1153 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 497, 800 |
| PdmI | GAANNNNTTC | 2 cut(s) | 614, 1565 |
| PfeI | GAWTC | 6 cut(s) | 134, 212, 407, 1086, 1221, 1757 |
| PfoI | TCCNGGA | 1 cut(s) | 307 |
| PinAI | ACCGGT | 1 cut(s) | 76 |
| PkrI | GCNGC | 4 cut(s) | 13, 265, 739, 1186 |
| Ple19I | CGATCG | 1 cut(s) | 794 |
| PleI | GAGTC | 1 cut(s) | 1678 |
| PmaCI | CACGTG | 1 cut(s) | 234 |
| PmlI | CACGTG | 1 cut(s) | 234 |
| PpsI | GAGTC | 1 cut(s) | 1678 |
| Ppu21I | YACGTR | 2 cut(s) | 234, 394 |
| PsiI | TTATAA | 1 cut(s) | 1056 |
| Psp124BI | GAGCTC | 1 cut(s) | 1165 |
| Psp6I | CCWGG | 1 cut(s) | 750 |
| PspCI | CACGTG | 1 cut(s) | 234 |
| PspEI | GGTNACC | 1 cut(s) | 1445 |
| PspGI | CCWGG | 1 cut(s) | 750 |
| PspN4I | GGNNCC | 3 cut(s) | 883, 917, 1496 |
| PspPI | GGNCC | 5 cut(s) | 74, 193, 224, 748, 1986 |
| PsuI | RGATCY | 2 cut(s) | 1462, 1894 |
| PvuI | CGATCG | 1 cut(s) | 794 |
| RsaI | GTAC | 6 cut(s) | 562, 689, 824, 917, 1365, 1695 |
| RsaNI | GTAC | 6 cut(s) | 561, 688, 823, 916, 1364, 1694 |
| RseI | CAYNNNNRTG | 5 cut(s) | 232, 318, 392, 683, 843 |
| Rsr2I | CGGWCCG | 1 cut(s) | 74 |
| RsrII | CGGWCCG | 1 cut(s) | 74 |
| SacI | GAGCTC | 1 cut(s) | 1165 |
| SacII | CCGCGG | 1 cut(s) | 15 |
| SapI | GCTCTTC | 1 cut(s) | 1153 |
| SaqAI | TTAA | 5 cut(s) | 728, 942, 1806, 1833, 1850 |
| SatI | GCNGC | 4 cut(s) | 12, 264, 738, 1185 |
| Sau96I | GGNCC | 5 cut(s) | 74, 193, 224, 748, 1986 |
| SchI | GAGTC | 1 cut(s) | 1679 |
| ScrFI | CCNGG | 2 cut(s) | 309, 752 |
| SduI | GDGCHC | 1 cut(s) | 1165 |
| Sfr274I | CTCGAG | 1 cut(s) | 556 |
| Sfr303I | CCGCGG | 1 cut(s) | 15 |
| SfuI | TTCGAA | 2 cut(s) | 521, 1755 |
| SgrBI | CCGCGG | 1 cut(s) | 15 |
| SinI | GGWCC | 4 cut(s) | 74, 224, 748, 1986 |
| SlaI | CTCGAG | 1 cut(s) | 556 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 232, 318, 392, 683, 843 |
| SmlI | CTYRAG | 6 cut(s) | 556, 1092, 1216, 1245, 1578, 1621 |
| SmoI | CTYRAG | 6 cut(s) | 556, 1092, 1216, 1245, 1578, 1621 |
| Sse9I | AATT | 8 cut(s) | 267, 337, 431, 523, 741, 1064, 1429, 1732 |
| SseBI | AGGCCT | 1 cut(s) | 368 |
| SsiI | CCGC | 7 cut(s) | 12, 14, 56, 696, 960, 1392, 1815 |
| SspMI | CTAG | 5 cut(s) | 461, 876, 1017, 1115, 1355 |
| SstI | GAGCTC | 1 cut(s) | 1165 |
| StuI | AGGCCT | 1 cut(s) | 368 |
| StyD4I | CCNGG | 2 cut(s) | 307, 750 |
| StyI | CCWWGG | 3 cut(s) | 140, 379, 1989 |
| TaaI | ACNGT | 6 cut(s) | 317, 484, 952, 1041, 1321, 1342 |
| TaiI | ACGT | 3 cut(s) | 236, 396, 1401 |
| TaqII | GACCGA | 2 cut(s) | 212, 736 |
| TasI | AATT | 8 cut(s) | 267, 337, 431, 523, 741, 1064, 1429, 1732 |
| TatI | WGTACW | 2 cut(s) | 560, 687 |
| TauI | GCSGC | 1 cut(s) | 14 |
| TfiI | GAWTC | 6 cut(s) | 134, 212, 407, 1086, 1221, 1757 |
| Tru1I | TTAA | 5 cut(s) | 728, 942, 1806, 1833, 1850 |
| Tru9I | TTAA | 5 cut(s) | 728, 942, 1806, 1833, 1850 |
| TscAI | CASTG | 3 cut(s) | 320, 790, 1326 |
| TseFI | GTSAC | 2 cut(s) | 781, 797 |
| TseI | GCWGC | 3 cut(s) | 263, 737, 1184 |
| Tsp45I | GTSAC | 2 cut(s) | 781, 797 |
| TspDTI | ATGAA | 5 cut(s) | 424, 477, 594, 1553, 1850 |
| TspGWI | ACGGA | 2 cut(s) | 345, 1351 |
| TspRI | CASTG | 3 cut(s) | 320, 790, 1326 |
| VpaK11BI | GGWCC | 4 cut(s) | 74, 224, 748, 1986 |
| XapI | RAATTY | 3 cut(s) | 431, 523, 1429 |
| XbaI | TCTAGA | 2 cut(s) | 875, 1114 |
| XhoI | CTCGAG | 1 cut(s) | 556 |
| XmnI | GAANNNNTTC | 2 cut(s) | 614, 1565 |
| XspI | CTAG | 5 cut(s) | 461, 876, 1017, 1115, 1355 |