Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

16428599 .. 16429407

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG133200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCACGGTGAATACGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTATCACATCGACGGACATCTTAACATCTAAACTTTCATCTTGTCGGCAGATTTGGGTTTATGGGAACAGCTTCGTAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACCTGAAGGCAAGAAAATACATTTTGGATGAGCTGAATAGTACGGGTCGGAAACAACAACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCAACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGACCGAGTTGAAAAACTTTATAGTGAGGCAAATGGTGGAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

154

Amino Acids

17.97

Weight (kDa)

9.15

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	74, 382, 428
AluBI	AGCT	3 cut(s)	168, 197, 271
AluI	AGCT	3 cut(s)	168, 197, 271
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	195
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	361
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	39, 47
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	4 cut(s)	168, 179, 197, 271
CviKI_1	RGCY	4 cut(s)	168, 179, 197, 271
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraI	TTTAAA	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	370
FaiI	YATR	7 cut(s)	11, 29, 159, 353, 368, 438, 463
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	1 cut(s)	370
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	39, 47
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	361
LpnPI	CCDG	2 cut(s)	175, 254
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	2 cut(s)	266, 398
MnlI	CCTC	4 cut(s)	178, 296, 351, 436
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	33, 119, 317
MspA1I	CMGCKG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	336
PagI	TCATGA	1 cut(s)	366
PceI	AGGCCT	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	33, 119, 317
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	364
SetI	ASST	5 cut(s)	57, 170, 199, 243, 273
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	398
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	395
SspI	AATATT	1 cut(s)	410
StuI	AGGCCT	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	39, 47
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	107, 301
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	33, 119, 317
Tru9I	TTAA	3 cut(s)	33, 119, 317
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	17, 123, 317
TspGWI	ACGGA	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.