Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

53505622 .. 53506556

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTGCCTTACTGAAAGCTGTGGTGGGTGTTTTACATCCGTTGGCAATGTTTATCCTATGATTGGAACTATTGGTGTCCCCCTGACAAGTATTGAAGCACGGCTTGAGTCAGTCCCAGGACTGGGATATGATGCACTTTCTAGTGTGCCACATGGAGAGATCAGCCTAAGAGGAAAGACCTTGTTTGAAGTACTAGAAATGAACATTGATAGCAAATACTTGCAGTGCCCCCTTATCACATCGAAGTTACAGACGGATATCTTACTTTCATCTGGTCGGCAGATATGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACCAATGACTACAAAAAAAGCTGTGGTGTCCACCTTGTAATGCCACCCAATGAAGACGTTTCTATGAAGCTAATCCATGCAGAGAACCTCAACAGTGAACTTTCTTCTAATGAACATGAAAAGGTATTGTTTCCTTTTCAAGCACGGGACTCAGAGGATTTCTGGGACAATTATCGTCCCAAGCAGAGGACTGACTGCAAAGAATTATATACCGATGCACAACTGGAGAATGAAAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

4.88

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	4 cut(s)	62, 121, 122, 564
AgsI	TTSAA	3 cut(s)	95, 188, 518
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	6 cut(s)	18, 303, 365, 399, 448, 616
AluI	AGCT	6 cut(s)	18, 303, 365, 399, 448, 616
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	117
BfaI	CTAG	2 cut(s)	141, 194
BisI	GCNGC	1 cut(s)	363
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	364
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	2 cut(s)	131, 367
BmsI	GCATC	3 cut(s)	121, 379, 583
BmuI	ACTGGG	2 cut(s)	131, 367
BpiI	GAAGAC	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	115, 348
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 121, 122, 564
Bse1I	ACTGG	3 cut(s)	126, 362, 606
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	115, 348
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	4 cut(s)	62, 121, 122, 564
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	357, 543
BseNI	ACTGG	3 cut(s)	126, 362, 606
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	347
BslFI	GGGAC	5 cut(s)	62, 98, 539, 540, 557
BslI	CCNNNNNNNGG	4 cut(s)	62, 121, 122, 564
BsmFI	GGGAC	5 cut(s)	62, 98, 539, 540, 557
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	358, 542
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	3 cut(s)	126, 362, 606
BssECI	CCNNGG	2 cut(s)	115, 348
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	473
BstDEI	CTNAG	3 cut(s)	167, 366, 529
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	230, 478
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	3 cut(s)	152, 455, 494
CviJI	RGCY	9 cut(s)	18, 103, 165, 303, 347, 365, 399, 448, 616
CviKI_1	RGCY	9 cut(s)	18, 103, 165, 303, 347, 365, 399, 448, 616
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	167, 366, 529
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	155, 458, 497
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	5 cut(s)	62, 98, 539, 540, 557
FatI	CATG	3 cut(s)	151, 454, 493
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	141, 194
GluI	GCNGC	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	155, 458, 497
HinfI	GANTC	3 cut(s)	107, 308, 527
Hpy166II	GTNNAC	2 cut(s)	409, 476
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	409, 476
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	134, 223, 458, 576, 596
HpyF3I	CTNAG	3 cut(s)	167, 366, 529
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	155, 458, 497
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	9 cut(s)	95, 102, 107, 129, 258, 343, 348, 526, 587
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	3 cut(s)	121, 379, 583
MaeI	CTAG	2 cut(s)	141, 194
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	443, 474
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	2 cut(s)	547, 581
MlyI	GAGTC	3 cut(s)	116, 317, 521
MnlI	CCTC	5 cut(s)	164, 346, 476, 526, 558
MroXI	GAANNNNTTC	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	3 cut(s)	155, 458, 497
PceI	AGGCCT	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	3 cut(s)	115, 316, 521
PpsI	GAGTC	3 cut(s)	115, 316, 521
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	3 cut(s)	116, 317, 521
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	3 cut(s)	121, 379, 583
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	547, 581
SseBI	AGGCCT	1 cut(s)	347
SspMI	CTAG	2 cut(s)	141, 194
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	242, 306
TasI	AATT	2 cut(s)	547, 581
TatI	WGTACW	1 cut(s)	190
TscAI	CASTG	2 cut(s)	230, 478
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	6 cut(s)	215, 258, 444, 458, 504, 510
TspGWI	ACGGA	2 cut(s)	28, 269
TspRI	CASTG	2 cut(s)	230, 478
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	2 cut(s)	141, 194
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.