RchiOBHm_Chr6g0262881

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
17634895 .. 17636377
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23576

Sequence Viewer

Length: 477 bp
ATGAGTTGTTTGGGGTGCAATCTGGTGATTAATTTTCACCAAGTCCTGTACCTATGTTTGGTTTATTGCACATTTTGGAAGCATAAATGTACCTCGTTTATATGTCCGAGGCAAATAAACTTGCAGAGAACATGTTTTGGTCATGGAAAGCCCAATACAAAGGCCATTTTTGATGTCAGGTTTTTACTGGACGACATTCAGGAACTAAAGCCTACTATGTTTTGTCTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCCAATTTTCAAACTGAAAAGACCGCAAGTACTCAAATATTACAAGGTATGATTTCTACTTGGATAAGAAAAGGTTGGAACTTTGATGAGTTAATCCTAAATATGTATGTTGAATTATATCATCTGCAGGAGCGGGTTGATAAACTTTATAATGAAGCAAAGGGTGGAAAAGTATAA

Protein Analysis

158

Amino Acids

18.57

Weight (kDa)

8.11

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccBSI CCGCTC 1 cut(s) 433
AciI CCGC 2 cut(s) 324, 433
AclWI GGATC 1 cut(s) 297
AfaI GTAC 3 cut(s) 50, 91, 331
AfiI CCNNNNNNNGG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 2 cut(s) 311, 413
AlwI GGATC 1 cut(s) 297
AoxI GGCC 1 cut(s) 162
AseI ATTAAT 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 29, 37
BbsI GAAGAC 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 425
BmcAI AGTACT 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 192
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 58
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 2 cut(s) 324, 433
BspANI GGCC 1 cut(s) 164
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 429
BspPI GGATC 1 cut(s) 297
BsrBI CCGCTC 1 cut(s) 433
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 289
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 164
CciI TCATGA 1 cut(s) 294
Csp6I GTAC 3 cut(s) 49, 90, 330
CviAII CATG 3 cut(s) 132, 143, 295
CviJI RGCY 3 cut(s) 151, 164, 211
CviKI_1 RGCY 3 cut(s) 151, 164, 211
CviQI GTAC 3 cut(s) 49, 90, 330
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
FaeI CATG 3 cut(s) 135, 146, 298
FatI CATG 3 cut(s) 131, 142, 294
FauI CCCGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 3 cut(s) 135, 146, 298
HinfI GANTC 1 cut(s) 298
HphI GGTGA 2 cut(s) 29, 37
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 2 cut(s) 200, 295
HpyCH4V TGCA 4 cut(s) 18, 69, 124, 427
Hsp92II CATG 3 cut(s) 135, 146, 298
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 6 cut(s) 8, 59, 163, 173, 185, 413
MalI GATC 1 cut(s) 291
MbiI CCGCTC 1 cut(s) 433
MboI GATC 1 cut(s) 289
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 289
MluCI AATT 3 cut(s) 31, 304, 413
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 4 cut(s) 102, 103, 224, 279
MseI TTAA 3 cut(s) 30, 245, 392
NdeII GATC 1 cut(s) 289
NlaIII CATG 3 cut(s) 135, 146, 298
NlaIV GGNNCC 1 cut(s) 264
NspI RCATGY 1 cut(s) 135
PagI TCATGA 1 cut(s) 294
PciI ACATGT 1 cut(s) 131
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PscI ACATGT 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 30
PsiI TTATAA 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 3 cut(s) 50, 91, 331
RsaNI GTAC 3 cut(s) 49, 90, 330
SaqAI TTAA 3 cut(s) 30, 245, 392
Sau3AI GATC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 1 cut(s) 292
SetI ASST 5 cut(s) 54, 95, 182, 349, 376
SfcI CTRYAG 1 cut(s) 425
Sse9I AATT 3 cut(s) 31, 304, 413
SsiI CCGC 2 cut(s) 324, 433
SspI AATATT 1 cut(s) 339
TaqI TCGA 1 cut(s) 229
TasI AATT 3 cut(s) 31, 304, 413
TatI WGTACW 1 cut(s) 329
Tru1I TTAA 3 cut(s) 30, 245, 392
Tru9I TTAA 3 cut(s) 30, 245, 392
TspDTI ATGAA 2 cut(s) 245, 468
VspI ATTAAT 1 cut(s) 30
XceI RCATGY 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.