Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

12508283 .. 12513449

Gene Structure 5167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1085400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGCTTGGGAGGCGGCAGGTCACCGATACAAAGGTGGGTCCGTATGTGTGGCTTACGTATCAAGAGGTTTATGACGCTGCCATTCGAATGGGTTCAGCCATCAGAAGCCGCGGTGTCAATCCTGGAGATCGTTGCGGTATATATGGATCAAACTGCCCCCAGTGGCTTACTGCAATGGAGGCCTGTAATAGCCAAGCCATAACATACGTTCCACTCTATGACACCCTCGGTGCTAATGCGGTTGAGTTCATCATCAATCATGCTGAAGTTTCAATAGCTTTTGTTCAAGAAAACAAACTCCCTGCTGTTCTGTCATGCCTTCCAAATTGTTCTACCAATTTAAAAACAATTGTCAGCTTTGCAAATGTTTCTAGCGCTCAAAAGGAGGAAGCTGAAGGACTGGGGGTATCTTGTTTTTCTTGGGAGGAATTCTCTCAGTTGGGAAATGCAGATTGTGAACTACCTCCGAAACGGAGGACTGACATTTGCACAATCATGTATACAAGCGGAACAACTGGAGAACCAAAAGGTGTACGTATTAGTAACGGAGCAATTATGTCAGAAGTATTGTCTGTGGAGCAACTACTATTTCTAACAGATAGAGTGTGTACGGAAGAAGATTCATATTTTTCCTTTCTTCCATTGGCCCATATATATGATCAAATAATGGAGAGCTATTGCATCTACAAAGGATCCTCTGTAGGTTTCTGGCGAGGAGATGTCAGATTTCTACTCGAGGACCTTCAGGAACTAATGCCTACTATGTTTTGTGGGGTACCTAGAGTGTATGATCGCATATACTCTGGTATTGTCAACAAAGTTTCATCTGGGGGTGTATTGAAGAAGACATTATTCCAATATGCTTATAACTACAAGTTGGCGAATCTGGAAAAGGGTCTCCCACAAGAAAAAGCAGCACCCCTCTTGGACAAACTTGTCTTCGATAAGATAAAACAAGCGTTAGGGGGACGAGTTCGTATATTGTTGTCTGGTGCTGCCCCTTTGCCTAGGCATGTGGAGGAATTTTTGAGGGTCACCAGCTGCAGCACTTTATCACAAGGATATGGCCTTACTGAAAGCTGTGGTGGTAGCTTCACGTCCATTGGCAATGTTTTTCCTATGATTGGAACTGTCGGTGTCCCTATCACAACTATTGAAGCAAGGCTTGAGTCAGTGCCAGAAATGGGATACGATGCACTTTCCAGTGTGCCCCGTGGAGAGATTTGCCTGAGAGGAACAACCTTGTTTTCTGGTTACCATAAGCGAGAAGATCTAACAGAGGAAGTCCTTGTTGATGGGTGGTTTCATACAGGTGACATTGGAGAATGGCAGGCAGATGGAGCAATGAAAATCATAGATAGGAAAAAGAATATATTTAAACTATCGCAAGGTGAATATGTTGCGGTAGAAAACATTGAAAGCAAATACTTGCAATGCCCTCTTATCACATCGATTTGGGTATATGGGAACAGCTTTGAGTCGTTTCTTGTTGCTGTGGTGGTCCCTGACCCTAAGGCGTTGGAGGATTGGGCAGCAGAGCATCACTTGACCGATGATTTCAAATCATTATGTCAAAACCCGAAGGCAAGCAAGTACATTTTGGATGAGCTCAATAGTACTGGTCAGAAACAGCAACTCCGAGGTTTTGAGCTGTTAAAAGCGGTTCACTTGGAACCGAAGCCCTTTGACATGGAGAGGGATCTCATTACTCCAACATTCAAACTGAAGAGACCACAGCTGCTTAAATATTACAAGGACCGTATTGATACACTGTACAGCGAAGGAAAAGGAGCAAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

601

Amino Acids

66.9

Weight (kDa)

5.54

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	13 - 420	6.2e-79	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
AasI	GACNNNNNNGTC	1 cut(s)	935
Acc36I	ACCTGC	1 cut(s)	7
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	1 cut(s)	111
AciI	CCGC	8 cut(s)	13, 109, 111, 135, 239, 507, 1403, 1661
AclWI	GGATC	4 cut(s)	154, 687, 700, 1707
AcsI	RAATTY	2 cut(s)	428, 1022
AcuI	CTGAAG	4 cut(s)	285, 414, 728, 1745
AfaI	GTAC	6 cut(s)	534, 610, 777, 1595, 1618, 1775
AfeI	AGCGCT	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	1124, 1184
AgsI	TTSAA	7 cut(s)	273, 287, 841, 1157, 1418, 1561, 1720
AjiI	CACGTC	1 cut(s)	1098
AjnI	CCWGG	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	1611
Alw26I	GTCTC	2 cut(s)	902, 1723
AlwI	GGATC	4 cut(s)	154, 687, 700, 1707
Ama87I	CYCGRG	1 cut(s)	734
Aor51HI	AGCGCT	1 cut(s)	376
AoxI	GGCC	3 cut(s)	180, 645, 1066
ApeKI	GCWGC	7 cut(s)	77, 914, 995, 1041, 1044, 1532, 1738
ApoI	RAATTY	2 cut(s)	428, 1022
Asp700I	GAANNNNTTC	1 cut(s)	91
Asp718I	GGTACC	1 cut(s)	775
AspA2I	CCTAGG	1 cut(s)	1007
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	5 cut(s)	38, 646, 739, 1501, 1756
AsuHPI	GGTGA	4 cut(s)	13, 1027, 1325, 1403
AsuII	TTCGAA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	4 cut(s)	38, 739, 1501, 1756
AvrII	CCTAGG	1 cut(s)	1007
AxyI	CCTNAGG	1 cut(s)	1512
BaeGI	GKGCMC	1 cut(s)	1212
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BamHI	GGATCC	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	1611
BbsI	GAAGAC	2 cut(s)	851, 931
Bbv12I	GWGCWC	1 cut(s)	1611
BbvI	GCAGC	7 cut(s)	64, 926, 982, 1028, 1056, 1544, 1725
BccI	CCATC	3 cut(s)	107, 1289, 1331
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	1181
BclI	TGATCA	1 cut(s)	658
BcoDI	GTCTC	2 cut(s)	902, 1723
BfaI	CTAG	3 cut(s)	372, 780, 1008
BfmI	CTRYAG	2 cut(s)	699, 1042
BfoI	RGCGCY	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	7
BfuI	GTATCC	1 cut(s)	1181
BglII	AGATCT	1 cut(s)	1270
BisI	GCNGC	9 cut(s)	14, 78, 109, 915, 996, 1042, 1045, 1533, 1739
BlnI	CCTAGG	1 cut(s)	1007
BlsI	GCNGC	9 cut(s)	15, 79, 110, 916, 997, 1043, 1046, 1534, 1740
BmcAI	AGTACT	1 cut(s)	1618
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	4 cut(s)	38, 739, 1501, 1756
BmeT110I	CYCGRG	1 cut(s)	734
BmgBI	CACGTC	1 cut(s)	1098
BmgT120I	GGNCC	5 cut(s)	38, 646, 739, 1501, 1756
BmiI	GGNNCC	5 cut(s)	39, 694, 777, 1503, 1674
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	2 cut(s)	154, 410
BmsI	GCATC	3 cut(s)	690, 1183, 1549
BmuI	ACTGGG	2 cut(s)	154, 410
BpiI	GAAGAC	2 cut(s)	851, 931
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	2 cut(s)	144, 537
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	1187
Bsa29I	ATCGAT	1 cut(s)	1451
BsaAI	YACGTR	2 cut(s)	57, 536
BsaI	GGTCTC	2 cut(s)	902, 1723
BsaJI	CCNNGG	5 cut(s)	109, 226, 1007, 1213, 1639
BsaXI	ACNNNNNCTCC	3 cut(s)	1620, 1650, 1782
Bsc4I	CCNNNNNNNGG	2 cut(s)	1124, 1184
Bse1I	ACTGG	5 cut(s)	160, 405, 520, 1203, 1624
Bse21I	CCTNAGG	1 cut(s)	1512
Bse3DI	GCAATG	4 cut(s)	180, 1114, 1350, 1439
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	1451
BseDI	CCNNGG	5 cut(s)	109, 226, 1007, 1213, 1639
BseGI	GGATG	1 cut(s)	1609
BseLI	CCNNNNNNNGG	2 cut(s)	1124, 1184
BseMI	GCAATG	4 cut(s)	180, 1114, 1350, 1439
BseMII	CTCAG	2 cut(s)	449, 1220
BseNI	ACTGG	5 cut(s)	160, 405, 520, 1203, 1624
BseRI	GAGGAG	1 cut(s)	729
BseSI	GKGCMC	1 cut(s)	1212
BseXI	GCAGC	7 cut(s)	64, 926, 982, 1028, 1056, 1544, 1725
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	182, 647, 1068
BshNI	GGYRCC	1 cut(s)	775
BshVI	ATCGAT	1 cut(s)	1451
BsiHKAI	GWGCWC	1 cut(s)	1611
BsiHKCI	CYCGRG	1 cut(s)	734
BslFI	GGGAC	3 cut(s)	981, 1124, 1487
BslI	CCNNNNNNNGG	2 cut(s)	1124, 1184
BsmAI	GTCTC	2 cut(s)	902, 1723
BsmFI	GGGAC	3 cut(s)	981, 1124, 1487
BsnI	GGCC	3 cut(s)	182, 647, 1068
Bso31I	GGTCTC	2 cut(s)	902, 1723
BsoBI	CYCGRG	1 cut(s)	734
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	1212, 1611
Bsp1407I	TGTACA	1 cut(s)	1773
Bsp143I	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
BspACI	CCGC	8 cut(s)	13, 109, 111, 135, 239, 507, 1403, 1661
BspANI	GGCC	3 cut(s)	182, 647, 1068
BspCNI	CTCAG	2 cut(s)	448, 1221
BspDI	ATCGAT	1 cut(s)	1451
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	5 cut(s)	39, 694, 777, 1503, 1674
BspMAI	CTGCAG	1 cut(s)	1046
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	4 cut(s)	154, 687, 700, 1707
BspT104I	TTCGAA	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	775
BspTNI	GGTCTC	2 cut(s)	902, 1723
BsrDI	GCAATG	4 cut(s)	180, 1114, 1350, 1439
BsrGI	TGTACA	1 cut(s)	1773
BsrI	ACTGG	5 cut(s)	160, 405, 520, 1203, 1624
BssECI	CCNNGG	5 cut(s)	109, 226, 1007, 1213, 1639
BssMI	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
BssNAI	GTATAC	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	1007
Bst1107I	GTATAC	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	1132, 1760, 1773
Bst6I	CTCTTC	1 cut(s)	1721
BstAUI	TGTACA	1 cut(s)	1773
BstBAI	YACGTR	2 cut(s)	57, 536
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	1332, 1588
BstDEI	CTNAG	3 cut(s)	435, 1229, 1512
BstDSI	CCRYGG	2 cut(s)	109, 1213
BstEII	GGTNACC	3 cut(s)	19, 1033, 1253
BstF5I	GGATG	1 cut(s)	1609
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	7 cut(s)	130, 149, 661, 695, 793, 1273, 1702
BstMAI	GTCTC	2 cut(s)	902, 1723
BstMBI	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 179, 1340
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	1016
BstPI	GGTNACC	3 cut(s)	19, 1033, 1253
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	2 cut(s)	699, 1042
BstSLI	GKGCMC	1 cut(s)	1212
BstSNI	TACGTA	2 cut(s)	57, 536
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	7 cut(s)	64, 926, 982, 1028, 1056, 1544, 1725
BstV2I	GAAGAC	2 cut(s)	851, 931
BstX2I	RGATCY	3 cut(s)	692, 1270, 1699
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	3 cut(s)	692, 1270, 1699
BstZ17I	GTATAC	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	1451
Bsu36I	CCTNAGG	1 cut(s)	1512
BsuI	GTATCC	1 cut(s)	1181
BsuRI	GGCC	3 cut(s)	182, 647, 1068
BsuTUI	ATCGAT	1 cut(s)	1451
BtgI	CCRYGG	2 cut(s)	109, 1213
BtrI	CACGTC	1 cut(s)	1098
BtsCI	GGATG	1 cut(s)	1609
BtsIMutI	CAGTG	4 cut(s)	167, 1179, 1210, 1769
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	1332, 1588
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	5 cut(s)	38, 646, 739, 1501, 1756
Cfr42I	CCGCGG	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	1451
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	6 cut(s)	533, 609, 776, 1594, 1617, 1774
CviAII	CATG	5 cut(s)	260, 315, 496, 1013, 1690
CviQI	GTAC	6 cut(s)	533, 609, 776, 1594, 1617, 1774
DdeI	CTNAG	3 cut(s)	435, 1229, 1512
DpnI	GATC	7 cut(s)	129, 148, 660, 694, 792, 1272, 1701
DpnII	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
DraI	TTTAAA	2 cut(s)	342, 1378
DrdI	GACNNNNNNGTC	1 cut(s)	935
DseDI	GACNNNNNNGTC	1 cut(s)	935
Eam1104I	CTCTTC	1 cut(s)	1721
EarI	CTCTTC	1 cut(s)	1721
Ecl136II	GAGCTC	1 cut(s)	1609
Eco105I	TACGTA	2 cut(s)	57, 536
Eco130I	CCWWGG	1 cut(s)	1007
Eco147I	AGGCCT	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	1611
Eco31I	GGTCTC	2 cut(s)	902, 1723
Eco47I	GGWCC	4 cut(s)	38, 739, 1501, 1756
Eco47III	AGCGCT	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	1609
Eco57I	CTGAAG	4 cut(s)	285, 414, 728, 1745
Eco81I	CCTNAGG	1 cut(s)	1512
Eco88I	CYCGRG	1 cut(s)	734
Eco91I	GGTNACC	3 cut(s)	19, 1033, 1253
EcoICRI	GAGCTC	1 cut(s)	1609
EcoO109I	RGGNCCY	1 cut(s)	739
EcoO65I	GGTNACC	3 cut(s)	19, 1033, 1253
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	1007
EcoT38I	GRGCYC	1 cut(s)	1611
ErhI	CCWWGG	1 cut(s)	1007
FaeI	CATG	5 cut(s)	263, 318, 499, 1016, 1693
FalI	AAGNNNNNCTT	2 cut(s)	1149, 1181
FaqI	GGGAC	3 cut(s)	981, 1124, 1487
FatI	CATG	5 cut(s)	259, 314, 495, 1012, 1689
FbaI	TGATCA	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	9 cut(s)	14, 78, 109, 915, 996, 1042, 1045, 1533, 1739
FokI	GGATG	1 cut(s)	1616
FriOI	GRGCYC	1 cut(s)	1611
Fsp4HI	GCNGC	9 cut(s)	14, 78, 109, 915, 996, 1042, 1045, 1533, 1739
FspBI	CTAG	3 cut(s)	372, 780, 1008
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	9 cut(s)	14, 78, 109, 915, 996, 1042, 1045, 1533, 1739
GsuI	CTGGAG	2 cut(s)	144, 537
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	182, 647, 1068
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	5 cut(s)	263, 318, 499, 1016, 1693
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	4 cut(s)	620, 883, 1169, 1478
HphI	GGTGA	4 cut(s)	13, 1027, 1325, 1403
Hpy166II	GTNNAC	6 cut(s)	458, 501, 533, 609, 814, 1666
Hpy188I	TCNGA	6 cut(s)	104, 468, 562, 725, 1626, 1640
Hpy188III	TCNNGA	4 cut(s)	62, 287, 746, 887
Hpy8I	GTNNAC	6 cut(s)	458, 501, 533, 609, 814, 1666
HpyAV	CCTTC	5 cut(s)	329, 389, 752, 1576, 1775
HpyCH4III	ACNGT	3 cut(s)	1132, 1760, 1773
HpyCH4IV	ACGT	4 cut(s)	56, 207, 535, 1097
HpyCH4V	TGCA	8 cut(s)	173, 362, 449, 489, 681, 1044, 1196, 1432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 179, 1340
HpyF3I	CTNAG	3 cut(s)	435, 1229, 1512
HpySE526I	ACGT	4 cut(s)	56, 207, 535, 1097
Hsp92II	CATG	5 cut(s)	263, 318, 499, 1016, 1693
HspAI	GCGC	1 cut(s)	375
KpnI	GGTACC	1 cut(s)	779
Ksp22I	TGATCA	1 cut(s)	658
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
LmnI	GCTCC	4 cut(s)	548, 577, 1340, 1790
Lsp1109I	GCAGC	7 cut(s)	64, 926, 982, 1028, 1056, 1544, 1725
LweI	GCATC	3 cut(s)	690, 1183, 1549
MaeI	CTAG	3 cut(s)	372, 780, 1008
MaeII	ACGT	4 cut(s)	56, 207, 535, 1097
MaeIII	GTNAC	5 cut(s)	19, 542, 1033, 1253, 1313
MalI	GATC	7 cut(s)	129, 148, 660, 694, 792, 1272, 1701
MboI	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
MboII	GAAGA	8 cut(s)	626, 629, 629, 853, 856, 931, 1280, 1738
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	3 cut(s)	692, 1270, 1699
MhlI	GDGCHC	2 cut(s)	1212, 1611
MluCI	AATT	6 cut(s)	325, 337, 348, 428, 552, 1022
MlyI	GAGTC	2 cut(s)	1178, 1487
MmeI	TCCRAC	2 cut(s)	1500, 1736
MroXI	GAANNNNTTC	1 cut(s)	91
MseI	TTAA	4 cut(s)	341, 1377, 1655, 1743
MslI	CAYNNNNRTG	4 cut(s)	86, 494, 654, 1311
MspA1I	CMGCKG	3 cut(s)	111, 1041, 1738
MspR9I	CCNGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	10, 179, 1340
NdeII	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
NlaIII	CATG	5 cut(s)	263, 318, 499, 1016, 1693
NlaIV	GGNNCC	5 cut(s)	39, 694, 777, 1503, 1674
NmuCI	GTSAC	3 cut(s)	19, 1033, 1313
NspI	RCATGY	1 cut(s)	1016
NspV	TTCGAA	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	734
PceI	AGGCCT	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	620, 883
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	9 cut(s)	15, 79, 110, 916, 997, 1043, 1046, 1534, 1740
PleI	GAGTC	2 cut(s)	1177, 1486
PpsI	GAGTC	2 cut(s)	1177, 1486
Ppu21I	YACGTR	2 cut(s)	57, 536
PpuMI	RGGWCCY	1 cut(s)	739
PsiI	TTATAA	1 cut(s)	867
Psp124BI	GAGCTC	1 cut(s)	1611
Psp5II	RGGWCCY	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	3 cut(s)	19, 1033, 1253
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	5 cut(s)	39, 694, 777, 1503, 1674
PspPI	GGNCC	5 cut(s)	38, 646, 739, 1501, 1756
PspPPI	RGGWCCY	1 cut(s)	739
PspXI	VCTCGAGB	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	1046
PsuI	RGATCY	3 cut(s)	692, 1270, 1699
PvuII	CAGCTG	2 cut(s)	1041, 1738
RsaI	GTAC	6 cut(s)	534, 610, 777, 1595, 1618, 1775
RsaNI	GTAC	6 cut(s)	533, 609, 776, 1594, 1617, 1774
RseI	CAYNNNNRTG	4 cut(s)	86, 494, 654, 1311
SacI	GAGCTC	1 cut(s)	1611
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	4 cut(s)	341, 1377, 1655, 1743
SatI	GCNGC	9 cut(s)	14, 78, 109, 915, 996, 1042, 1045, 1533, 1739
Sau3AI	GATC	7 cut(s)	127, 146, 658, 692, 790, 1270, 1699
Sau96I	GGNCC	5 cut(s)	38, 646, 739, 1501, 1756
ScaI	AGTACT	1 cut(s)	1618
SchI	GAGTC	2 cut(s)	1178, 1487
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	1212, 1611
SfaNI	GCATC	3 cut(s)	690, 1183, 1549
SfcI	CTRYAG	2 cut(s)	699, 1042
Sfr274I	CTCGAG	1 cut(s)	734
Sfr303I	CCGCGG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	4 cut(s)	38, 739, 1501, 1756
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	4 cut(s)	86, 494, 654, 1311
SmlI	CTYRAG	2 cut(s)	734, 1166
SmoI	CTYRAG	2 cut(s)	734, 1166
SnaBI	TACGTA	2 cut(s)	57, 536
Sse9I	AATT	6 cut(s)	325, 337, 348, 428, 552, 1022
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	8 cut(s)	13, 109, 111, 135, 239, 507, 1403, 1661
SspI	AATATT	1 cut(s)	1748
SspMI	CTAG	3 cut(s)	372, 780, 1008
SstI	GAGCTC	1 cut(s)	1611
StuI	AGGCCT	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	1007
TaaI	ACNGT	3 cut(s)	1132, 1760, 1773
TaiI	ACGT	4 cut(s)	59, 210, 538, 1100
TaqI	TCGA	4 cut(s)	85, 735, 942, 1451
TaqII	GACCGA	1 cut(s)	1565
TasI	AATT	6 cut(s)	325, 337, 348, 428, 552, 1022
TatI	WGTACW	3 cut(s)	1593, 1616, 1773
TauI	GCSGC	2 cut(s)	16, 111
TfiI	GAWTC	2 cut(s)	620, 883
Tru1I	TTAA	4 cut(s)	341, 1377, 1655, 1743
Tru9I	TTAA	4 cut(s)	341, 1377, 1655, 1743
TscAI	CASTG	4 cut(s)	167, 1179, 1210, 1776
TseFI	GTSAC	3 cut(s)	19, 1033, 1313
TseI	GCWGC	7 cut(s)	77, 914, 995, 1041, 1044, 1532, 1738
Tsp45I	GTSAC	3 cut(s)	19, 1033, 1313
TspDTI	ATGAA	5 cut(s)	238, 612, 813, 1295, 1361
TspGWI	ACGGA	4 cut(s)	30, 487, 561, 626
TspRI	CASTG	4 cut(s)	167, 1179, 1210, 1776
VpaK11BI	GGWCC	4 cut(s)	38, 739, 1501, 1756
XapI	RAATTY	2 cut(s)	428, 1022
XceI	RCATGY	1 cut(s)	1016
XhoI	CTCGAG	1 cut(s)	734
XmaJI	CCTAGG	1 cut(s)	1007
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	3 cut(s)	372, 780, 1008
ZrmI	AGTACT	1 cut(s)	1618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.