RchiOBHm_Chr6g0261171

decanoate-CoA ligase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000225
Physical Location & Seq
Reverse (-)
16132011 .. 16134397
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23422

Sequence Viewer

Length: 264 bp
ATGAAAGTTACAGACAGGAAAATGGAAGTATTTAAACTATCTCAAGGTGAATATGTTGCTATGGAAAGCATTGAAAGCAAATACTTGCAATGGCCCCTTATCACATCGATATGGGTTTATGGGAACGGCTTTGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGGCAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGATTACAAATCATTGTGTCAAAACCTGAAAGCAAGAAATTTACATTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920
Pfam Domains
Protein Families
AMP-binding

Protein Analysis

87

Amino Acids

10.07

Weight (kDa)

6.26

Isoelectric Point (pI)

19.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 247
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 92, 171
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 59
BbvI GCAGC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 162
BisI GCNGC 1 cut(s) 189
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 193
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 94, 173
BshVI ATCGAT 1 cut(s) 107
BsnI GGCC 2 cut(s) 94, 173
Bsp1720I GCTNAGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 94, 173
BspCNI CTCAG 1 cut(s) 184
BspDI ATCGAT 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 107
BsuRI GGCC 2 cut(s) 94, 173
BsuTUI ATCGAT 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 107
CviJI RGCY 4 cut(s) 94, 129, 173, 191
CviKI_1 RGCY 4 cut(s) 94, 129, 173, 191
DdeI CTNAG 1 cut(s) 192
DraI TTTAAA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaiI YATR 4 cut(s) 54, 62, 112, 120
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 2 cut(s) 94, 173
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 192
LpnPI CCDG 4 cut(s) 147, 169, 174, 248
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 7
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 172
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 75
NlaIV GGNNCC 1 cut(s) 95
PceI AGGCCT 1 cut(s) 173
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 93
PvuII CAGCTG 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 162
SetI ASST 3 cut(s) 49, 193, 237
SfaNI GCATC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 1 cut(s) 173
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 174
TaqI TCGA 1 cut(s) 107
TasI AATT 1 cut(s) 247
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.