Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015236.1

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

31190 .. 32190

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015236.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgtggcttgagctccgatctgacctcgagcttattagccgacctgagcttgtcattctccaacgtgatataggaggatggcagcctaatggagcaatgaaagttacagacaggaaaatggaattatttaaactgtctcaaggtgaatatgttgctatggaaagcattgaaagcaaatacttgcaatggccccttatcacatcgaagttacagctggatatctttacatcttacctttcatctggtcggcagatatgggtttatgggaacggctttgagtcatttcttgttgctgtggttgttcctggcagaaaggccttggaggactgggcagctgagcatcatttgactgatgattacaaatcattgtgtcaaaacctggaagcaagaaattacattttggatgagctcaatattacggctttgagggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

144

Amino Acids

16.67

Weight (kDa)

5.04

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	304, 378
AluBI	AGCT	6 cut(s)	13, 31, 49, 214, 335, 409
AluI	AGCT	6 cut(s)	13, 31, 49, 214, 335, 409
Alw21I	GWGCWC	2 cut(s)	15, 411
Alw26I	GTCTC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	188, 315
ApeKI	GCWGC	2 cut(s)	82, 332
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	26
BanII	GRGCYC	2 cut(s)	15, 411
Bbv12I	GWGCWC	2 cut(s)	15, 411
BbvI	GCAGC	2 cut(s)	94, 344
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	306, 380
BcoDI	GTCTC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	83, 333
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	2 cut(s)	84, 334
Bme1390I	CCNGG	2 cut(s)	306, 380
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	2 cut(s)	306, 380
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	29, 123
BsaJI	CCNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	102, 191
BseBI	CCWGG	2 cut(s)	306, 380
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	83, 409
BseMI	GCAATG	2 cut(s)	102, 191
BseMII	CTCAG	2 cut(s)	36, 327
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	94, 344
BshFI	GGCC	2 cut(s)	190, 317
BsiHKAI	GWGCWC	2 cut(s)	15, 411
BsiHKCI	CYCGRG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	190, 317
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	15, 411
Bsp143I	GATC	1 cut(s)	17
Bsp1720I	GCTNAGC	1 cut(s)	336
BspANI	GGCC	2 cut(s)	190, 317
BspCNI	CTCAG	2 cut(s)	37, 328
BspLI	GGNNCC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	102, 191
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	306, 380
Bst4CI	ACNGT	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	45, 336
BstF5I	GGATG	2 cut(s)	83, 409
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	2 cut(s)	306, 380
BstSCI	CCNGG	2 cut(s)	304, 378
BstV1I	GCAGC	2 cut(s)	94, 344
BsuRI	GGCC	2 cut(s)	190, 317
BtsCI	GGATG	2 cut(s)	83, 409
Cfr13I	GGNCC	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	45, 336
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
DraI	TTTAAA	1 cut(s)	130
Ecl136II	GAGCTC	2 cut(s)	13, 409
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	15, 411
Eco32I	GATATC	1 cut(s)	220
Eco53kI	GAGCTC	2 cut(s)	13, 409
Eco88I	CYCGRG	1 cut(s)	26
EcoICRI	GAGCTC	2 cut(s)	13, 409
EcoRII	CCWGG	2 cut(s)	304, 378
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	2 cut(s)	15, 411
ErhI	CCWWGG	1 cut(s)	318
FaiI	YATR	5 cut(s)	71, 150, 158, 256, 264
Fnu4HI	GCNGC	2 cut(s)	83, 333
FokI	GGATG	2 cut(s)	90, 416
FriOI	GRGCYC	2 cut(s)	15, 411
Fsp4HI	GCNGC	2 cut(s)	83, 333
GluI	GCNGC	2 cut(s)	83, 333
HaeIII	GGCC	2 cut(s)	190, 317
HinfI	GANTC	1 cut(s)	278
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	17, 22
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	2 cut(s)	45, 336
HpySE526I	ACGT	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	18, 92
LpnPI	CCDG	9 cut(s)	57, 97, 200, 228, 291, 313, 318, 365, 392
Lsp1109I	GCAGC	2 cut(s)	94, 344
LweI	GCATC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	103, 207
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MhlI	GDGCHC	2 cut(s)	15, 411
MluCI	AATT	2 cut(s)	122, 391
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	35, 68, 316, 420
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	214, 335
MspR9I	CCNGG	2 cut(s)	306, 380
MvaI	CCWGG	2 cut(s)	306, 380
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	84, 334
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	2 cut(s)	15, 411
Psp6I	CCWGG	2 cut(s)	304, 378
PspGI	CCWGG	2 cut(s)	304, 378
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	189
PspXI	VCTCGAGB	1 cut(s)	26
PvuII	CAGCTG	2 cut(s)	214, 335
SacI	GAGCTC	2 cut(s)	15, 411
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	2 cut(s)	83, 333
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	306, 380
SduI	GDGCHC	2 cut(s)	15, 411
SfaNI	GCATC	1 cut(s)	349
Sfr274I	CTCGAG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	3 cut(s)	8, 26, 138
SmoI	CTYRAG	3 cut(s)	8, 26, 138
Sse9I	AATT	2 cut(s)	122, 391
SseBI	AGGCCT	1 cut(s)	317
SspI	AATATT	1 cut(s)	415
SstI	GAGCTC	2 cut(s)	15, 411
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	304, 378
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	27, 203
TasI	AATT	2 cut(s)	122, 391
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	2 cut(s)	82, 332
TspDTI	ATGAA	2 cut(s)	113, 228
XhoI	CTCGAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.