Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

11823342 .. 11847885

Gene Structure 24544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG105000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATGGCTGAAACTCTGTTTTCACTGGCATTGACTATTAAGAGGAACCCAAGCGGTCAAATGCTTGGTCAACGCCAAGTCAACGAGAAGAAGCTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAGCCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCCAACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGCCTTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGGACTGTGGGTGTCCCCTTGACAACTATTGAAGCACGGCTTGAGTCGGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCAAAAGCGAGCAGATCTCACTGAAGAAGTCCTTATTGATGGGTGGTTCTATAAAGGTGATATTGGACAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTGTCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTTACAGAAACGGCTTGGAGGACTGGGCAGCTAAGCATCATTTGAGTTATGACTACAAATCATTGTGTCAAAACATGAAGGCAAGAAAATACATTTTGGATGAGCTCAATAGTATGGGTCAGAAACAGCGACTTCGATGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

279

Amino Acids

31.64

Weight (kDa)

7.6

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	67 - 135	4.9e-07	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 192
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	447
AcvI	CACGTG	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	272, 331, 332
AgsI	TTSAA	3 cut(s)	179, 305, 566
AluBI	AGCT	5 cut(s)	94, 228, 621, 683, 757
AluI	AGCT	5 cut(s)	94, 228, 621, 683, 757
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	478, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
Asp700I	GAANNNNTTC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	473, 551
AvaII	GGWCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	759
BbrPI	CACGTG	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	2 cut(s)	490, 692
BccI	CCATC	2 cut(s)	437, 783
BceAI	ACGGC	2 cut(s)	326, 679
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	1 cut(s)	351
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	479, 681
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	2 cut(s)	480, 682
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	4 cut(s)	47, 132, 324, 822
BmrI	ACTGGG	2 cut(s)	341, 685
BmsI	GCATC	2 cut(s)	331, 697
BmuI	ACTGGG	2 cut(s)	341, 685
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	335, 519
Bsa29I	ATCGAT	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 331, 332
Bse1I	ACTGG	3 cut(s)	30, 336, 680
Bse3DI	GCAATG	3 cut(s)	262, 498, 587
BseCI	ATCGAT	1 cut(s)	599
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	3 cut(s)	272, 331, 332
BseMI	GCAATG	3 cut(s)	262, 498, 587
BseNI	ACTGG	3 cut(s)	30, 336, 680
BseXI	GCAGC	2 cut(s)	490, 692
BshFI	GGCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	759
BslFI	GGGAC	3 cut(s)	272, 289, 308
BslI	CCNNNNNNNGG	3 cut(s)	272, 331, 332
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	3 cut(s)	272, 289, 308
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp143I	GATC	2 cut(s)	157, 418
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	2 cut(s)	54, 192
BspANI	GGCC	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	599
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	4 cut(s)	47, 132, 324, 822
BspPI	GGATC	1 cut(s)	165
BsrDI	GCAATG	3 cut(s)	262, 498, 587
BsrI	ACTGG	3 cut(s)	30, 336, 680
BssMI	GATC	2 cut(s)	157, 418
Bst4CI	ACNGT	2 cut(s)	280, 531
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	377, 684
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	2 cut(s)	160, 421
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	2 cut(s)	157, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 567
BstPI	GGTNACC	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	490, 692
BstX2I	RGATCY	2 cut(s)	157, 418
BstYI	RGATCY	2 cut(s)	157, 418
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	2 cut(s)	23, 423
Cac8I	GCNNGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	599
CviAII	CATG	2 cut(s)	163, 727
DdeI	CTNAG	2 cut(s)	377, 684
DpnI	GATC	2 cut(s)	159, 420
DpnII	GATC	2 cut(s)	157, 418
DraI	TTTAAA	1 cut(s)	526
Ecl136II	GAGCTC	1 cut(s)	757
Eco147I	AGGCCT	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	447
Eco72I	CACGTG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	757
EcoO65I	GGTNACC	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	2 cut(s)	166, 730
FalI	AAGNNNNNCTT	4 cut(s)	297, 329, 420, 452
FaqI	GGGAC	3 cut(s)	272, 289, 308
FatI	CATG	2 cut(s)	162, 726
Fnu4HI	GCNGC	2 cut(s)	479, 681
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	2 cut(s)	479, 681
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	2 cut(s)	479, 681
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	166, 730
HincII	GTYRAC	2 cut(s)	71, 82
HindII	GTYRAC	2 cut(s)	71, 82
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	166, 317, 626
HphI	GGTGA	2 cut(s)	473, 551
Hpy166II	GTNNAC	2 cut(s)	71, 82
Hpy188I	TCNGA	1 cut(s)	774
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	2 cut(s)	71, 82
HpyAV	CCTTC	1 cut(s)	724
HpyCH4III	ACNGT	2 cut(s)	280, 531
HpyCH4IV	ACGT	2 cut(s)	245, 361
HpyCH4V	TGCA	2 cut(s)	344, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 567
HpyF3I	CTNAG	2 cut(s)	377, 684
HpySE526I	ACGT	2 cut(s)	245, 361
Hsp92II	CATG	2 cut(s)	166, 730
Kzo9I	GATC	2 cut(s)	157, 418
LmnI	GCTCC	2 cut(s)	130, 488
LpnPI	CCDG	6 cut(s)	11, 317, 339, 384, 493, 661
Lsp1109I	GCAGC	2 cut(s)	490, 692
LweI	GCATC	2 cut(s)	331, 697
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	245, 361
MaeIII	GTNAC	2 cut(s)	401, 592
MalI	GATC	2 cut(s)	159, 420
MboI	GATC	2 cut(s)	157, 418
MboII	GAAGA	2 cut(s)	100, 440
MflI	RGATCY	2 cut(s)	157, 418
MhlI	GDGCHC	1 cut(s)	759
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	160, 326, 635
MnlI	CCTC	5 cut(s)	36, 92, 147, 374, 664
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	4 cut(s)	39, 113, 525, 803
MwoI	GCNNNNNNNGC	2 cut(s)	234, 567
NdeII	GATC	2 cut(s)	157, 418
NlaIII	CATG	2 cut(s)	166, 730
NlaIV	GGNNCC	4 cut(s)	47, 132, 324, 822
NmuCI	GTSAC	1 cut(s)	592
PagI	TCATGA	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	480, 682
PleI	GAGTC	3 cut(s)	160, 325, 634
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
PpsI	GAGTC	3 cut(s)	160, 325, 634
Ppu21I	YACGTR	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	759
PspCI	CACGTG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	401
PspN4I	GGNNCC	4 cut(s)	47, 132, 324, 822
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	157, 418
SacI	GAGCTC	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	39, 113, 525, 803
SatI	GCNGC	2 cut(s)	479, 681
Sau3AI	GATC	2 cut(s)	157, 418
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	3 cut(s)	160, 326, 635
SduI	GDGCHC	1 cut(s)	759
SfaNI	GCATC	2 cut(s)	331, 697
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	2 cut(s)	314, 534
SmoI	CTYRAG	2 cut(s)	314, 534
Sse9I	AATT	1 cut(s)	195
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	54, 192
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	759
StuI	AGGCCT	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	280, 531
TaiI	ACGT	2 cut(s)	248, 364
TaqI	TCGA	4 cut(s)	97, 599, 624, 787
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	1 cut(s)	195
Tru1I	TTAA	4 cut(s)	39, 113, 525, 803
Tru9I	TTAA	4 cut(s)	39, 113, 525, 803
TscAI	CASTG	2 cut(s)	30, 430
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	478, 680
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	113, 509, 743, 803
TspRI	CASTG	2 cut(s)	30, 430
VpaK11BI	GGWCC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.