Rh6BG134600

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
21145729 .. 21170916
25188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG134600.1

Sequence Viewer

Length: 846 bp
ATGGAATTGAGGCGAAAGAGGCTCATCCCTGTGATCGAGGTTGGCTCCGGCCTCCACCAGAACCCAGACGCAAGGCTCGGATCCCAGACCGGCGACGAACAGAAGAGCCGTGCAGCTGCGGAGTCAACTGCGTCAACGTCGCGGTCTCCACCGGCGGGGGAGGCTTTGAAGCCGTCTAATGCAGCTCCTCGACTCACCAGAGATCGGAGGATCAAAATTCCAGCGGCACTCCTCGACTCACCAGATCTGATTCGAATTAGAGAGGAGGCACTGTTCGAGGAGGTGGAATATAGAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTCGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTATCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAACATCTTTTGGCTGATGACTACAAATCATTGTGTGAAAACATGAAGGCAAGAAAATACATTTGGGATGAGCTCAATAGTACGGGTCAGATACAGCAACTTCAAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCCACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGACCGAGTTGAAAAACTTTATAGTGAAGCAAAGGGTGGAGAATTTCGTTTCATCTTACACGCTCTTGACTTCACATTGGTGTTGATCGAAGCTACCAGGAAACTGTGA

Protein Analysis

281

Amino Acids

32.06

Weight (kDa)

6.93

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 142
AciI CCGC 5 cut(s) 119, 142, 155, 224, 716
AclWI GGATC 4 cut(s) 75, 88, 218, 690
AcsI RAATTY 2 cut(s) 216, 779
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 155, 204
AgsI TTSAA 5 cut(s) 169, 401, 623, 703, 749
AjnI CCWGG 1 cut(s) 833
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AleI CACNNNNGTG 1 cut(s) 815
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 6 cut(s) 116, 185, 456, 518, 592, 830
AluI AGCT 6 cut(s) 116, 185, 456, 518, 592, 830
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 2 cut(s) 150, 372
AlwI GGATC 4 cut(s) 75, 88, 218, 690
AoxI GGCC 2 cut(s) 49, 498
ApeKI GCWGC 5 cut(s) 113, 116, 182, 313, 515
ApoI RAATTY 2 cut(s) 216, 779
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 739
AsuHPI GGTGA 4 cut(s) 187, 231, 308, 386
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 739
BamHI GGATCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 5 cut(s) 103, 125, 194, 325, 527
BceAI ACGGC 2 cut(s) 93, 157
BciT130I CCWGG 1 cut(s) 835
BcoDI GTCTC 2 cut(s) 150, 372
BglII AGATCT 1 cut(s) 244
BisI GCNGC 6 cut(s) 114, 117, 183, 225, 314, 516
BlsI GCNGC 6 cut(s) 115, 118, 184, 226, 315, 517
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 1 cut(s) 739
BmgT120I GGNCC 1 cut(s) 739
BmiI GGNNCC 3 cut(s) 46, 82, 657
BmrFI CCNGG 1 cut(s) 835
BmrI ACTGGG 1 cut(s) 520
BmuI ACTGGG 1 cut(s) 520
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 204
Bse118I RCCGGY 2 cut(s) 89, 151
Bse1I ACTGG 1 cut(s) 515
Bse3DI GCAATG 2 cut(s) 333, 422
BseBI CCWGG 1 cut(s) 835
BseCI ATCGAT 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 24, 592
BseLI CCNNNNNNNGG 2 cut(s) 155, 204
BseMI GCAATG 2 cut(s) 333, 422
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 4 cut(s) 177, 221, 278, 293
BseXI GCAGC 5 cut(s) 103, 125, 194, 325, 527
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 51, 500
BshVI ATCGAT 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 594
BsiSI CCGG 3 cut(s) 48, 90, 152
BslI CCNNNNNNNGG 2 cut(s) 155, 204
BsmAI GTCTC 2 cut(s) 150, 372
BsnI GGCC 2 cut(s) 51, 500
Bso31I GGTCTC 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
BspACI CCGC 5 cut(s) 119, 142, 155, 224, 716
BspANI GGCC 2 cut(s) 51, 500
BspDI ATCGAT 1 cut(s) 434
BspFNI CGCG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 3 cut(s) 46, 82, 657
BspPI GGATC 4 cut(s) 75, 88, 218, 690
BspQI GCTCTTC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 2 cut(s) 333, 422
BsrFI RCCGGY 2 cut(s) 89, 151
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 2 cut(s) 89, 151
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 3 cut(s) 273, 366, 843
Bst6I CTCTTC 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 253
BstF5I GGATG 2 cut(s) 24, 592
BstFNI CGCG 1 cut(s) 142
BstKTI GATC 7 cut(s) 36, 83, 205, 213, 247, 685, 825
BstMAI GTCTC 2 cut(s) 150, 372
BstMBI GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
BstMWI GCNNNNNNNGC 3 cut(s) 19, 161, 402
BstNI CCWGG 1 cut(s) 835
BstSCI CCNGG 1 cut(s) 833
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 5 cut(s) 103, 125, 194, 325, 527
BstX2I RGATCY 3 cut(s) 80, 244, 682
BstYI RGATCY 3 cut(s) 80, 244, 682
Bsu15I ATCGAT 1 cut(s) 434
BsuRI GGCC 2 cut(s) 51, 500
BsuTUI ATCGAT 1 cut(s) 434
BtsCI GGATG 2 cut(s) 24, 592
BtsIMutI CAGTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 687
Cfr10I RCCGGY 2 cut(s) 89, 151
Cfr13I GGNCC 1 cut(s) 739
ClaI ATCGAT 1 cut(s) 434
CseI GACGC 2 cut(s) 77, 120
Csp6I GTAC 1 cut(s) 600
CviAII CATG 2 cut(s) 562, 688
CviQI GTAC 1 cut(s) 600
DpnI GATC 7 cut(s) 35, 82, 204, 212, 246, 684, 824
DpnII GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
DraI TTTAAA 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Ecl136II GAGCTC 1 cut(s) 592
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 739
Eco53kI GAGCTC 1 cut(s) 592
EcoICRI GAGCTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 833
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 2 cut(s) 565, 691
FaiI YATR 9 cut(s) 291, 338, 356, 381, 447, 563, 674, 689, 759
FatI CATG 2 cut(s) 561, 687
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 6 cut(s) 114, 117, 183, 225, 314, 516
FokI GGATG 2 cut(s) 11, 599
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 6 cut(s) 114, 117, 183, 225, 314, 516
GluI GCNGC 6 cut(s) 114, 117, 183, 225, 314, 516
HaeIII GGCC 2 cut(s) 51, 500
HapII CCGG 3 cut(s) 48, 90, 152
HgaI GACGC 2 cut(s) 77, 120
Hin1II CATG 2 cut(s) 565, 691
HincII GTYRAC 2 cut(s) 126, 135
HindII GTYRAC 2 cut(s) 126, 135
HinfI GANTC 6 cut(s) 122, 192, 236, 250, 461, 691
HpaII CCGG 3 cut(s) 48, 90, 152
HphI GGTGA 4 cut(s) 187, 231, 308, 386
Hpy166II GTNNAC 2 cut(s) 126, 135
Hpy188I TCNGA 4 cut(s) 80, 207, 249, 609
Hpy188III TCNNGA 3 cut(s) 488, 688, 803
Hpy8I GTNNAC 2 cut(s) 126, 135
Hpy99I CGWCG 2 cut(s) 98, 142
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 3 cut(s) 273, 366, 843
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 113, 182, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 161, 402
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 565, 691
Kzo9I GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 3 cut(s) 50, 190, 323
Lsp1109I GCAGC 5 cut(s) 103, 125, 194, 325, 527
MaeII ACGT 1 cut(s) 137
MalI GATC 7 cut(s) 35, 82, 204, 212, 246, 684, 824
MboI GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
MboII GAAGA 1 cut(s) 115
MflI RGATCY 3 cut(s) 80, 244, 682
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 5 cut(s) 5, 216, 255, 719, 779
MlyI GAGTC 5 cut(s) 131, 186, 230, 470, 685
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 2 cut(s) 360, 638
MslI CAYNNNNRTG 2 cut(s) 29, 815
MspA1I CMGCKG 3 cut(s) 116, 224, 518
MspI CCGG 3 cut(s) 48, 90, 152
MspR9I CCNGG 1 cut(s) 835
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 19, 161, 402
NdeII GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
NlaIII CATG 2 cut(s) 565, 691
NlaIV GGNNCC 3 cut(s) 46, 82, 657
NspV TTCGAA 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 815
PagI TCATGA 1 cut(s) 687
PceI AGGCCT 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 6 cut(s) 115, 118, 184, 226, 315, 517
PleI GAGTC 5 cut(s) 130, 186, 230, 469, 685
PpsI GAGTC 5 cut(s) 130, 186, 230, 469, 685
Psp124BI GAGCTC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 833
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 3 cut(s) 46, 82, 657
PspPI GGNCC 1 cut(s) 739
PsuI RGATCY 3 cut(s) 80, 244, 682
PvuII CAGCTG 2 cut(s) 116, 518
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 2 cut(s) 29, 815
SacI GAGCTC 1 cut(s) 594
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 360, 638
SatI GCNGC 6 cut(s) 114, 117, 183, 225, 314, 516
Sau3AI GATC 7 cut(s) 33, 80, 202, 210, 244, 682, 822
Sau96I GGNCC 1 cut(s) 739
SchI GAGTC 5 cut(s) 131, 186, 230, 470, 685
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 1 cut(s) 594
SfuI TTCGAA 1 cut(s) 253
SgrAI CRCCGGYG 1 cut(s) 151
SinI GGWCC 1 cut(s) 739
SmiMI CAYNNNNRTG 2 cut(s) 29, 815
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 5 cut(s) 5, 216, 255, 719, 779
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 5 cut(s) 119, 142, 155, 224, 716
SspI AATATT 1 cut(s) 731
SstI GAGCTC 1 cut(s) 594
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 3 cut(s) 273, 366, 843
TaiI ACGT 1 cut(s) 140
TaqI TCGA 9 cut(s) 36, 190, 234, 253, 276, 390, 434, 459, 825
TaqII GACCGA 1 cut(s) 756
TasI AATT 5 cut(s) 5, 216, 255, 719, 779
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 2 cut(s) 360, 638
Tru9I TTAA 2 cut(s) 360, 638
TscAI CASTG 1 cut(s) 276
TseI GCWGC 5 cut(s) 113, 116, 182, 313, 515
TspDTI ATGAA 4 cut(s) 344, 578, 638, 778
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 739
XapI RAATTY 2 cut(s) 216, 779
XmnI GAANNNNTTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.