Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16945152 .. 16948682

Gene Structure 3531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATCAGTTTGCGGTGAAGGTGGAGGAGGCGAGGCCGGCCGCTGATGGGAGGCCGTCGGCGGGGCCGGTGTATCGGAGCATTTATGCTAAAGATGGGCTGTTGGAGTTGCCGGAGGGGTTCGAGTCACCGTGGCAGTTTCTCAGTGACTCGGTTAAGAGGAACCCAAGCGGTCGAATGCTTGGTCAACGACAAGTCAACGAGAAGAAGGCGGGTCCATATGTGTGGAGTACATATCAAGAGGTCTATGATGCAGCCATTCGTATGGGTTCGGCCATCAGAAGCCGTGGTGTCAATCCTGGAGATCGTTGTGGTATATATGGATCAAATTGCCCCCAATGGATTATTGCAATGGAGGCCTGTAACAGCCATGCAATTACATACGTTCCACTTTATGACACCCTTGTGTACGGAAGAAGATTCATATTTTTCGTTTCTCCCGTTGGCCCATATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

152

Amino Acids

16.99

Weight (kDa)

8.43

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	72 - 135	4.9e-16	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	14, 42, 62, 171, 212
AclWI	GGATC	2 cut(s)	12, 331
AcoI	YGGCCR	2 cut(s)	39, 273
AfaI	GTAC	2 cut(s)	232, 410
AfiI	CCNNNNNNNGG	2 cut(s)	48, 62
AjnI	CCWGG	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	404
AlwI	GGATC	2 cut(s)	12, 331
AoxI	GGCC	7 cut(s)	35, 39, 53, 65, 273, 357, 445
ApeKI	GCWGC	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AspS9I	GGNCC	3 cut(s)	65, 215, 446
AsuHPI	GGTGA	2 cut(s)	28, 120
AvaII	GGWCC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	3 cut(s)	41, 89, 284
BceAI	ACGGC	2 cut(s)	40, 270
BciT130I	CCWGG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	42, 255
BlsI	GCNGC	2 cut(s)	43, 256
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	65, 215, 446
BmiI	GGNNCC	3 cut(s)	66, 164, 216
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	131, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 62
Bse118I	RCCGGY	2 cut(s)	37, 67
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	131, 286
BseLI	CCNNNNNNNGG	2 cut(s)	48, 62
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	2 cut(s)	42, 175
BshFI	GGCC	7 cut(s)	37, 41, 55, 67, 275, 359, 447
BsiEI	CGRYCG	2 cut(s)	42, 175
BsiSI	CCGG	3 cut(s)	38, 68, 113
BslI	CCNNNNNNNGG	2 cut(s)	48, 62
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	7 cut(s)	37, 41, 55, 67, 275, 359, 447
Bsp143I	GATC	3 cut(s)	4, 304, 323
BspACI	CCGC	5 cut(s)	14, 42, 62, 171, 212
BspANI	GGCC	7 cut(s)	37, 41, 55, 67, 275, 359, 447
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	66, 164, 216
BspPI	GGATC	2 cut(s)	12, 331
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	2 cut(s)	37, 67
BssAI	RCCGGY	2 cut(s)	37, 67
BssECI	CCNNGG	2 cut(s)	131, 286
BssMI	GATC	3 cut(s)	4, 304, 323
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	2 cut(s)	131, 286
BstKTI	GATC	3 cut(s)	7, 307, 326
BstMBI	GATC	3 cut(s)	4, 304, 323
BstMCI	CGRYCG	2 cut(s)	42, 175
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 356
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	266
BstXI	CCANNNNNNTGG	2 cut(s)	225, 265
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	7 cut(s)	37, 41, 55, 67, 275, 359, 447
BtgI	CCRYGG	2 cut(s)	131, 286
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	39
Cfr10I	RCCGGY	2 cut(s)	37, 67
Cfr13I	GGNCC	3 cut(s)	65, 215, 446
Csp6I	GTAC	2 cut(s)	231, 409
CviAII	CATG	1 cut(s)	371
CviQI	GTAC	2 cut(s)	231, 409
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	3 cut(s)	6, 306, 325
DpnII	GATC	3 cut(s)	4, 304, 323
EaeI	YGGCCR	2 cut(s)	39, 273
EagI	CGGCCG	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	215
Eco52I	CGGCCG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	374
FatI	CATG	1 cut(s)	370
FauI	CCCGC	2 cut(s)	55, 205
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	42, 255
FseI	GGCCGGCC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	42, 255
GluI	GCNGC	2 cut(s)	42, 255
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	7 cut(s)	37, 41, 55, 67, 275, 359, 447
HapII	CCGG	3 cut(s)	38, 68, 113
Hin1II	CATG	1 cut(s)	374
HincII	GTYRAC	2 cut(s)	188, 199
HindII	GTYRAC	2 cut(s)	188, 199
HinfI	GANTC	3 cut(s)	125, 149, 420
HpaII	CCGG	3 cut(s)	38, 68, 113
HphI	GGTGA	2 cut(s)	28, 120
Hpy166II	GTNNAC	3 cut(s)	188, 199, 409
Hpy188I	TCNGA	2 cut(s)	78, 281
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	3 cut(s)	188, 199, 409
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	13, 202
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	254, 350, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 356
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	374
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	4, 304, 323
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	6 cut(s)	51, 81, 126, 285, 312, 373
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	3 cut(s)	126, 146, 362
MalI	GATC	3 cut(s)	6, 306, 325
MboI	GATC	3 cut(s)	4, 304, 323
MboII	GAAGA	3 cut(s)	217, 426, 429
MluCI	AATT	2 cut(s)	328, 375
MlyI	GAGTC	2 cut(s)	134, 143
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	19, 22, 27, 45, 109, 153, 235, 349
MroNI	GCCGGC	1 cut(s)	37
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	4 cut(s)	223, 263, 404, 454
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	38, 68, 113
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	38, 356
NaeI	GCCGGC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	3 cut(s)	4, 304, 323
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	3 cut(s)	66, 164, 216
NmuCI	GTSAC	2 cut(s)	126, 146
OliI	CACNNNNGTG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	420
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	43, 256
PleI	GAGTC	2 cut(s)	133, 143
PpsI	GAGTC	2 cut(s)	133, 143
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	66, 164, 216
PspPI	GGNCC	3 cut(s)	65, 215, 446
RigI	GGCCGGCC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	232, 410
RsaNI	GTAC	2 cut(s)	231, 409
RseI	CAYNNNNRTG	4 cut(s)	223, 263, 404, 454
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	42, 255
Sau3AI	GATC	3 cut(s)	4, 304, 323
Sau96I	GGNCC	3 cut(s)	65, 215, 446
SchI	GAGTC	2 cut(s)	134, 143
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	3 cut(s)	24, 246, 387
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	4 cut(s)	223, 263, 404, 454
Sse9I	AATT	2 cut(s)	328, 375
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	5 cut(s)	14, 42, 62, 171, 212
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	123, 175
TasI	AATT	2 cut(s)	328, 375
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	126, 146
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	2 cut(s)	126, 146
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.