FvH4_6g05950

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000225
Physical Location & Seq
Forward (+)
3409909 .. 3410686
778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05950.t1

Sequence Viewer

Length: 354 bp
ATGATTGGCAGGAAAGAAGTAATTGATGATGAAGGTTGGCTGCATACTGGAGACATTGGTTTGTGGTTACCTGGAGGCAGGCTTAAGATTATTGATAGGAAAAAGAACATCTTCAAGTTGGCAGAGGGTGAGTATGTAGCACCGGAGAAGATAGAGAATGTCTATGCCAAGTGCCAATTTGTTGCCCAGTGTTTTATTTACGGTGATAGCTTTAAGTCCTGTTTACTAGCTATAATTGCAGTGGATCCTGATGTATTGAAAGAGTGGGCTGCATCTGAAGGCATAAAGTACGAAGATCTCAGACAATTGTGCAATAATCCAAGAGTAAGGTCTGTAGTTTTGGCTGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

5.42

Isoelectric Point (pI)

26.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 239, 252
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 290
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 2 cut(s) 115, 259
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 210, 230
AluI AGCT 2 cut(s) 210, 230
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 2 cut(s) 239, 252
ApeKI GCWGC 2 cut(s) 40, 269
Asp700I GAANNNNTTC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 140, 215
BamHI GGATCC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 27, 256
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 295
BisI GCNGC 2 cut(s) 41, 270
BlsI GCNGC 2 cut(s) 42, 271
Bme1390I CCNGG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 72
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 2 cut(s) 69, 93
BsaWI WCCGGW 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 52, 187
BseBI CCWGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 2 cut(s) 52, 187
BseXI GCAGC 2 cut(s) 27, 256
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 244, 295
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 2 cut(s) 239, 252
BspTI CTTAAG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 52, 187
BssMI GATC 2 cut(s) 244, 295
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 299
BstEII GGTNACC 1 cut(s) 66
BstKTI GATC 2 cut(s) 247, 298
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 244, 295
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 352
BstPI GGTNACC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 27, 256
BstX2I RGATCY 2 cut(s) 244, 295
BstYI RGATCY 2 cut(s) 244, 295
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 194, 246
Cac8I GCNNGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 289
CviAII CATG 1 cut(s) 349
CviJI RGCY 6 cut(s) 40, 82, 210, 230, 269, 344
CviKI_1 RGCY 6 cut(s) 40, 82, 210, 230, 269, 344
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 299
DpnI GATC 2 cut(s) 246, 297
DpnII GATC 2 cut(s) 244, 295
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 352
FaiI YATR 6 cut(s) 45, 135, 165, 233, 284, 350
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 41, 270
Fsp4HI GCNGC 2 cut(s) 41, 270
FspBI CTAG 1 cut(s) 227
GluI GCNGC 2 cut(s) 41, 270
GsuI CTGGAG 2 cut(s) 69, 93
HapII CCGG 1 cut(s) 143
Hin1II CATG 1 cut(s) 352
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 140, 215
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 277, 302
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 26, 272
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 43, 239, 272, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 299
Hsp92II CATG 1 cut(s) 352
Kzo9I GATC 2 cut(s) 244, 295
LpnPI CCDG 8 cut(s) 33, 57, 64, 84, 156, 200, 232, 261
Lsp1109I GCAGC 2 cut(s) 27, 256
LweI GCATC 1 cut(s) 281
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 66
MalI GATC 2 cut(s) 246, 297
MboI GATC 2 cut(s) 244, 295
MboII GAAGA 3 cut(s) 103, 160, 305
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 2 cut(s) 244, 295
MluCI AATT 4 cut(s) 21, 176, 234, 305
MnlI CCTC 2 cut(s) 68, 118
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 84, 213
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 2 cut(s) 244, 295
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 1 cut(s) 352
PciI ACATGT 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 42, 271
PscI ACATGT 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 246
PsuI RGATCY 2 cut(s) 244, 295
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 2 cut(s) 84, 213
SatI GCNGC 2 cut(s) 41, 270
Sau3AI GATC 2 cut(s) 244, 295
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 37, 73, 212, 232, 332
SfaNI GCATC 1 cut(s) 281
SfcI CTRYAG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 4 cut(s) 21, 176, 234, 305
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 203
TasI AATT 4 cut(s) 21, 176, 234, 305
Tru1I TTAA 2 cut(s) 84, 213
Tru9I TTAA 2 cut(s) 84, 213
TscAI CASTG 2 cut(s) 194, 246
TseI GCWGC 2 cut(s) 40, 269
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 2 cut(s) 194, 246
Vha464I CTTAAG 1 cut(s) 83
XceI RCATGY 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.