RchiOBHm_Chr6g0261761

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
16588298 .. 16589964
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23474

Sequence Viewer

Length: 852 bp
ATGCATATAACTATTGGCAAATCTGGAGAAGGGTTTACACAAGAAAAAGCGGCACCTCTCTTGAACAAGCTTGTATTTAACAAGATAAAACAAGCATTAGGAGGACGAGTTCGTATAATGTTGTCTAGTGCTGCGCCTTTGCCCAGGCATGTGGAGGAATTTTTGACGGTCACCAGCTGCAGCACTTTATTACAAGGATATGGACTTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGAACTGTGGGTGTCCCCTTGACAACTATTGAAGCACGGCTTGAGTCAGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTCTAGAGATTTGCCTAAGGGGGAAAACCTTGTTTTCTGGTTACCACAAGCGACAAGATCTCACTGAAGAAGTCCTTATTGATGGGCGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTGATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTATCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCAGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAATATGAAGGCAAGAAAATACATTTTGGATGAGCTCACTAGTATGGGTCAGAAACAGCAAGTGTGTGCTCCATCCCTGGTTCATGCTATGTTGCTTAAGTTTATTCATCTGACTTACAAGACATTTTTATTGCAGCTCTGA

Protein Analysis

283

Amino Acids

31.55

Weight (kDa)

7.07

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 30 - 132 1.1e-14 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 2 cut(s) 50, 436
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 260, 319, 320
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 3 cut(s) 64, 293, 554
AhlI ACTAGT 1 cut(s) 749
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 2 cut(s) 143, 786
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 7 cut(s) 70, 177, 216, 609, 671, 745, 847
AluI AGCT 7 cut(s) 70, 177, 216, 609, 671, 745, 847
Alw21I GWGCWC 2 cut(s) 747, 781
Alw26I GTCTC 1 cut(s) 525
AoxI GGCC 1 cut(s) 651
ApeKI GCWGC 6 cut(s) 131, 177, 180, 466, 668, 844
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 163, 461, 539
AxyI CCTNAGG 1 cut(s) 365
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 747
Bbv12I GWGCWC 2 cut(s) 747, 781
BbvI GCAGC 5 cut(s) 118, 164, 192, 478, 680
BccI CCATC 3 cut(s) 425, 467, 790
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 145, 788
BcoDI GTCTC 1 cut(s) 525
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 4 cut(s) 126, 339, 353, 750
BfmI CTRYAG 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 806
BglII AGATCT 1 cut(s) 406
BisI GCNGC 7 cut(s) 51, 132, 178, 181, 467, 669, 845
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 7 cut(s) 52, 133, 179, 182, 468, 670, 846
Bme1390I CCNGG 2 cut(s) 145, 788
BmgBI CACGTC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 54, 440
BmrFI CCNGG 2 cut(s) 145, 788
BmrI ACTGGG 2 cut(s) 329, 673
BmsI GCATC 2 cut(s) 319, 685
BmuI ACTGGG 2 cut(s) 329, 673
BpmI CTGGAG 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 672
BpuEI CTTGAG 2 cut(s) 323, 507
Bsa29I ATCGAT 1 cut(s) 587
BsaJI CCNNGG 3 cut(s) 143, 654, 786
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 319, 320
Bse1I ACTGG 2 cut(s) 324, 668
Bse21I CCTNAGG 1 cut(s) 365
Bse3DI GCAATG 3 cut(s) 250, 486, 575
BseBI CCWGG 2 cut(s) 145, 788
BseCI ATCGAT 1 cut(s) 587
BseDI CCNNGG 3 cut(s) 143, 654, 786
BseGI GGATG 2 cut(s) 745, 782
BseLI CCNNNNNNNGG 3 cut(s) 260, 319, 320
BseMI GCAATG 3 cut(s) 250, 486, 575
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 2 cut(s) 324, 668
BseXI GCAGC 5 cut(s) 118, 164, 192, 478, 680
BshFI GGCC 1 cut(s) 653
BshNI GGYRCC 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 747, 781
BslFI GGGAC 2 cut(s) 260, 296
BslI CCNNNNNNNGG 3 cut(s) 260, 319, 320
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 2 cut(s) 260, 296
BsnI GGCC 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 747, 781
Bsp143I GATC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 672
BspACI CCGC 2 cut(s) 50, 436
BspANI GGCC 1 cut(s) 653
BspCNI CTCAG 1 cut(s) 664
BspDI ATCGAT 1 cut(s) 587
BspLI GGNNCC 2 cut(s) 54, 440
BspMAI CTGCAG 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 806
BsrDI GCAATG 3 cut(s) 250, 486, 575
BsrI ACTGG 2 cut(s) 324, 668
BssECI CCNNGG 3 cut(s) 143, 654, 786
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 654
Bst2UI CCWGG 2 cut(s) 145, 788
Bst4CI ACNGT 3 cut(s) 169, 268, 519
BstAFI CTTAAG 1 cut(s) 806
BstDEI CTNAG 2 cut(s) 365, 672
BstEII GGTNACC 2 cut(s) 169, 389
BstF5I GGATG 2 cut(s) 745, 782
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 222, 555
BstNI CCWGG 2 cut(s) 145, 788
BstNSI RCATGY 1 cut(s) 152
BstPI GGTNACC 2 cut(s) 169, 389
BstSCI CCNGG 2 cut(s) 143, 786
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 5 cut(s) 118, 164, 192, 478, 680
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 587
Bsu36I CCTNAGG 1 cut(s) 365
BsuRI GGCC 1 cut(s) 653
BsuTUI ATCGAT 1 cut(s) 587
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 745, 782
BtsIMutI CAGTG 1 cut(s) 411
CfoI GCGC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 587
CviAII CATG 2 cut(s) 149, 794
DdeI CTNAG 2 cut(s) 365, 672
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DraI TTTAAA 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 1 cut(s) 654
Eco147I AGGCCT 1 cut(s) 653
Eco24I GRGCYC 1 cut(s) 747
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 435
Eco81I CCTNAGG 1 cut(s) 365
Eco91I GGTNACC 2 cut(s) 169, 389
EcoICRI GAGCTC 1 cut(s) 745
EcoO65I GGTNACC 2 cut(s) 169, 389
EcoRII CCWGG 2 cut(s) 143, 786
EcoT14I CCWWGG 1 cut(s) 654
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 654
FaeI CATG 2 cut(s) 152, 797
FalI AAGNNNNNCTT 4 cut(s) 285, 317, 408, 440
FaqI GGGAC 2 cut(s) 260, 296
FatI CATG 2 cut(s) 148, 793
Fnu4HI GCNGC 7 cut(s) 51, 132, 178, 181, 467, 669, 845
FokI GGATG 2 cut(s) 752, 769
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 7 cut(s) 51, 132, 178, 181, 467, 669, 845
FspBI CTAG 4 cut(s) 126, 339, 353, 750
GlaI GCGC 1 cut(s) 135
GluI GCNGC 7 cut(s) 51, 132, 178, 181, 467, 669, 845
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 653
HhaI GCGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 152, 797
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 305, 614
HphI GGTGA 3 cut(s) 163, 461, 539
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 762, 822, 851
Hpy188III TCNNGA 4 cut(s) 24, 61, 353, 641
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 23, 712
HpyCH4III ACNGT 3 cut(s) 169, 268, 519
HpyCH4IV ACGT 2 cut(s) 233, 349
HpyCH4V TGCA 5 cut(s) 4, 180, 332, 568, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 555
HpyF3I CTNAG 2 cut(s) 365, 672
HpySE526I ACGT 2 cut(s) 233, 349
Hsp92II CATG 2 cut(s) 152, 797
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 476, 784
Lsp1109I GCAGC 5 cut(s) 118, 164, 192, 478, 680
LweI GCATC 2 cut(s) 319, 685
MaeI CTAG 4 cut(s) 126, 339, 353, 750
MaeII ACGT 2 cut(s) 233, 349
MaeIII GTNAC 2 cut(s) 169, 389
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 1 cut(s) 428
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 747, 781
MluCI AATT 1 cut(s) 158
MlyI GAGTC 2 cut(s) 314, 623
MnlI CCTC 4 cut(s) 66, 95, 148, 652
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 3 cut(s) 78, 513, 807
MslI CAYNNNNRTG 2 cut(s) 447, 752
MspA1I CMGCKG 2 cut(s) 177, 671
MspCI CTTAAG 1 cut(s) 806
MspR9I CCNGG 2 cut(s) 145, 788
MvaI CCWGG 2 cut(s) 145, 788
MwoI GCNNNNNNNGC 2 cut(s) 222, 555
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 152, 797
NlaIV GGNNCC 2 cut(s) 54, 440
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 152
PceI AGGCCT 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 608
PkrI GCNGC 7 cut(s) 52, 133, 179, 182, 468, 670, 846
PleI GAGTC 2 cut(s) 313, 622
PpsI GAGTC 2 cut(s) 313, 622
Psp124BI GAGCTC 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 143, 786
PspEI GGTNACC 2 cut(s) 169, 389
PspGI CCWGG 2 cut(s) 143, 786
PspN4I GGNNCC 2 cut(s) 54, 440
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 2 cut(s) 177, 671
RseI CAYNNNNRTG 2 cut(s) 447, 752
SacI GAGCTC 1 cut(s) 747
SaqAI TTAA 3 cut(s) 78, 513, 807
SatI GCNGC 7 cut(s) 51, 132, 178, 181, 467, 669, 845
Sau3AI GATC 1 cut(s) 406
SchI GAGTC 2 cut(s) 314, 623
ScrFI CCNGG 2 cut(s) 145, 788
SduI GDGCHC 2 cut(s) 747, 781
SfaNI GCATC 2 cut(s) 319, 685
SfcI CTRYAG 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 447, 752
SmlI CTYRAG 3 cut(s) 302, 522, 806
SmoI CTYRAG 3 cut(s) 302, 522, 806
SpeI ACTAGT 1 cut(s) 749
Sse9I AATT 1 cut(s) 158
SseBI AGGCCT 1 cut(s) 653
SsiI CCGC 2 cut(s) 50, 436
SspMI CTAG 4 cut(s) 126, 339, 353, 750
SstI GAGCTC 1 cut(s) 747
StuI AGGCCT 1 cut(s) 653
StyD4I CCNGG 2 cut(s) 143, 786
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 3 cut(s) 169, 268, 519
TaiI ACGT 2 cut(s) 236, 352
TaqI TCGA 2 cut(s) 587, 612
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 78, 513, 807
Tru9I TTAA 3 cut(s) 78, 513, 807
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 6 cut(s) 131, 177, 180, 466, 668, 844
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 497, 731, 782, 806
TspRI CASTG 1 cut(s) 418
Vha464I CTTAAG 1 cut(s) 806
XapI RAATTY 1 cut(s) 158
XbaI TCTAGA 1 cut(s) 352
XceI RCATGY 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 4 cut(s) 126, 339, 353, 750
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.