Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

683990 .. 690336

Gene Structure 6347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGACAAGAGCGCTGTCGGAAGTTGCAAATCTATCTGGGTGGACTTTCACAAGCGGGCAGTACGTATAGCTAAAGACATCATGAAGAAGTGGTCTAAACCACATGAGATACCATTCAGTACTACTGAGTTGGCTGAATTCTGTTCTAAAATCAAAGTCTTATGTCACGACGAGTGGAGGGATTCAAGTGGTTCCAAAAGTGGTTCGACTGTCAAATGGATTTCAAGGGGTTTCGACTATTTGGATTCTCTATTCAAATTCATTTCAAATGGGAGAACAGAATTGGCTCTTTGTGTTCCTGTCGATTCTTCTACTGGTTGCTCTTTCCAGACCTTACTGAAAGCTGCGGTTGGTTTCCCCTTGATAACTATTGAAGCATGGCTTGAGTTGGTCCCAGAACTAGGGTATGATGCAATTTCTAGTGTGCCACGTGGAGAGATTTGCCGAAGAGGAAAAACCTTGTTTTCTGGTTACCACATACAAGATCTAACTAAAGGTGGGCTGTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

170

Amino Acids

18.95

Weight (kDa)

8.51

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	55, 347
AcsI	RAATTY	2 cut(s)	137, 257
AcvI	CACGTG	1 cut(s)	431
AfaI	GTAC	2 cut(s)	63, 121
AfeI	AGCGCT	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	5 cut(s)	186, 225, 256, 267, 374
AluBI	AGCT	2 cut(s)	71, 344
AluI	AGCT	2 cut(s)	71, 344
Aor51HI	AGCGCT	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	137, 257
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	391
BbrPI	CACGTG	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	331
BfaI	CTAG	2 cut(s)	401, 420
BfoI	RGCGCY	1 cut(s)	15
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	193, 393
BmsI	GCATC	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	404
BsaAI	YACGTR	2 cut(s)	65, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	484
BspACI	CCGC	2 cut(s)	55, 347
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	193, 393
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	442
BstBAI	YACGTR	2 cut(s)	65, 431
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	470
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	487
BstMBI	GATC	1 cut(s)	484
BstPI	GGTNACC	1 cut(s)	470
BstSNI	TACGTA	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	62, 120
CviAII	CATG	3 cut(s)	82, 104, 378
CviJI	RGCY	6 cut(s)	71, 134, 287, 344, 382, 502
CviKI_1	RGCY	6 cut(s)	71, 134, 287, 344, 382, 502
CviQI	GTAC	2 cut(s)	62, 120
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco105I	TACGTA	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	13
Eco72I	CACGTG	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	137
FaeI	CATG	3 cut(s)	85, 107, 381
FaiI	YATR	7 cut(s)	68, 83, 105, 163, 379, 408, 479
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	3 cut(s)	81, 103, 377
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	401, 420
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	15
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	85, 107, 381
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	182, 245, 305
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	82, 167, 328
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	64, 430
HpyCH4V	TGCA	2 cut(s)	27, 413
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	64, 430
Hsp92II	CATG	3 cut(s)	85, 107, 381
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	484
LpnPI	CCDG	6 cut(s)	22, 300, 312, 341, 408, 453
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	401, 420
MaeII	ACGT	2 cut(s)	64, 430
MaeIII	GTNAC	2 cut(s)	164, 470
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	3 cut(s)	97, 300, 459
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	4 cut(s)	137, 257, 281, 414
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	2 cut(s)	171, 443
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	3 cut(s)	85, 107, 381
NlaIV	GGNNCC	2 cut(s)	193, 393
NmuCI	GTSAC	1 cut(s)	164
PagI	TCATGA	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	182, 245, 305
PkrI	GCNGC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
Ppu21I	YACGTR	2 cut(s)	65, 431
PspCI	CACGTG	1 cut(s)	431
PspEI	GGTNACC	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	193, 393
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	2 cut(s)	63, 121
RsaNI	GTAC	2 cut(s)	62, 120
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	484
Sau96I	GGNCC	1 cut(s)	391
ScaI	AGTACT	1 cut(s)	121
SetI	ASST	7 cut(s)	67, 73, 335, 346, 433, 461, 499
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SnaBI	TACGTA	1 cut(s)	65
Sse9I	AATT	4 cut(s)	137, 257, 281, 414
SsiI	CCGC	2 cut(s)	55, 347
SspMI	CTAG	2 cut(s)	401, 420
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	2 cut(s)	67, 433
TaqI	TCGA	3 cut(s)	206, 234, 303
TasI	AATT	4 cut(s)	137, 257, 281, 414
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	182, 245, 305
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	98, 250
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	137, 257
XspI	CTAG	2 cut(s)	401, 420
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.