Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

270371 .. 274501

Gene Structure 4131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgtatcgcctggaagtgtctctcgtttacaaaaatgtagaacaagaacaaggctgggaaagggttcttttactgcatcaggccacagtttatgacggctaccttgtaagggaggttgaatcctctttctgccacgacagctctcatgtctcctgtcagcgtgattggctgataccatctaaagctgtgttctttaagatttggaggcttgacatgtttcaaaagaagatggagagagagacgagtctgtatgacgtatcagaatttgcttcttcttcgccccttggctgggagatcgttgtggtatattatatggctcaaattcccccccgatggattattgcaatggaggcgtgtaacagccatgccattacatatgttccactttatgacacccttggtgctaatgcagttgagttcatcatcaaccatgctgaagttccaatagcttttgttcaagagaacaaaatccctgctattatatcatgccttccaaactgttctacgcctttaaaaacttcacaaatgtttctagcactcaaaagaaggaagcagaagaactgggggtatcttgcttttcgtgggagaaattctttcagttgtcccttctcaaccacccgctcctcgattcgctcattctcctccacactctattggatggtgaagccaactccgcagcgaaagcgcgacgatgcctctaaggacctgcactgctccagtgtcctcatccaagacgaggacgacgccctcgaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

252

Amino Acids

29.19

Weight (kDa)

6.99

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	714
AccBSI	CCGCTC	1 cut(s)	621
AccII	CGCG	1 cut(s)	687
AciI	CCGC	2 cut(s)	619, 674
AcsI	RAATTY	3 cut(s)	263, 321, 589
AcuI	CTGAAG	1 cut(s)	456
AcyI	GRCGYC	1 cut(s)	744
AfiI	CCNNNNNNNGG	5 cut(s)	109, 288, 289, 333, 736
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	3 cut(s)	119, 221, 458
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	141, 185, 449
AluI	AGCT	3 cut(s)	141, 185, 449
Alw26I	GTCTC	3 cut(s)	24, 154, 233
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	676
ApoI	RAATTY	3 cut(s)	263, 321, 589
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	1 cut(s)	703
AsuHPI	GGTGA	1 cut(s)	673
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	4 cut(s)	184, 223, 327, 652
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	3 cut(s)	24, 154, 233
BfaI	CTAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	714
BisI	GCNGC	1 cut(s)	677
BlsI	GCNGC	1 cut(s)	678
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	703
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	2 cut(s)	85, 682
BmuI	ACTGGG	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	700
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	283, 397
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 288, 289, 333, 736
Bse1I	ACTGG	2 cut(s)	566, 717
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	283, 397
BseGI	GGATG	2 cut(s)	663, 726
BseLI	CCNNNNNNNGG	5 cut(s)	109, 288, 289, 333, 736
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	566, 717
BseRI	GAGGAG	2 cut(s)	613, 631
BseXI	GCAGC	1 cut(s)	688
BseYI	CCCAGC	2 cut(s)	54, 288
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	749
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	5 cut(s)	109, 288, 289, 333, 736
BsmAI	GTCTC	3 cut(s)	24, 154, 233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	749
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	2 cut(s)	619, 674
BspANI	GGCC	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	714
BsrBI	CCGCTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	566, 717
BssECI	CCNNGG	2 cut(s)	283, 397
BssMI	GATC	1 cut(s)	294
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	2 cut(s)	283, 397
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	88, 500
BstACI	GRCGYC	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	699
BstF5I	GGATG	2 cut(s)	663, 726
BstFNI	CGCG	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	3 cut(s)	24, 154, 233
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 166, 350, 673, 682
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	663, 726
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	709, 724
BveI	ACCTGC	1 cut(s)	714
CfoI	GCGC	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	703
CseI	GACGC	1 cut(s)	752
CviAII	CATG	5 cut(s)	146, 214, 365, 431, 486
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
DraI	TTTAAA	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	283, 397
Eco47I	GGWCC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	2 cut(s)	283, 397
ErhI	CCWWGG	2 cut(s)	283, 397
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	5 cut(s)	149, 217, 368, 434, 489
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	5 cut(s)	145, 213, 364, 430, 485
FauI	CCCGC	1 cut(s)	626
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	677
FokI	GGATG	2 cut(s)	670, 713
Fsp4HI	GCNGC	1 cut(s)	677
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	1 cut(s)	677
GsaI	CCCAGC	2 cut(s)	58, 292
GsuI	CTGGAG	1 cut(s)	700
HaeIII	GGCC	1 cut(s)	83
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	1 cut(s)	687
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	5 cut(s)	149, 217, 368, 434, 489
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HinfI	GANTC	3 cut(s)	119, 244, 628
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	2 cut(s)	692, 746
HpyAV	CCTTC	3 cut(s)	500, 540, 616
HpyCH4III	ACNGT	2 cut(s)	88, 500
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	76, 344, 410, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 166, 350, 673, 682
HpyF3I	CTNAG	1 cut(s)	699
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	5 cut(s)	149, 217, 368, 434, 489
HspAI	GCGC	1 cut(s)	685
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	626, 719
LpnPI	CCDG	9 cut(s)	23, 40, 65, 166, 274, 486, 547, 719, 730
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	2 cut(s)	85, 682
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	296
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	1 cut(s)	294
MboII	GAAGA	4 cut(s)	238, 264, 267, 568
MluCI	AATT	3 cut(s)	263, 321, 589
MlyI	GAGTC	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	2 cut(s)	195, 512
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	5 cut(s)	138, 166, 350, 673, 682
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	5 cut(s)	149, 217, 368, 434, 489
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	749
PciI	ACATGT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	119, 628
PkrI	GCNGC	1 cut(s)	678
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	703
PscI	ACATGT	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	1 cut(s)	9
PspFI	CCCAGC	2 cut(s)	54, 288
PspGI	CCWGG	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	703
PspPPI	RGGWCCY	1 cut(s)	703
PspXI	VCTCGAGB	1 cut(s)	749
SaqAI	TTAA	2 cut(s)	195, 512
SatI	GCNGC	1 cut(s)	677
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	8 cut(s)	105, 117, 143, 187, 258, 451, 708, 756
SfaNI	GCATC	2 cut(s)	85, 682
Sfr274I	CTCGAG	1 cut(s)	749
SinI	GGWCC	1 cut(s)	703
SlaI	CTCGAG	1 cut(s)	749
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	3 cut(s)	263, 321, 589
SsiI	CCGC	2 cut(s)	619, 674
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	2 cut(s)	283, 397
TaaI	ACNGT	2 cut(s)	88, 500
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	626, 750
TasI	AATT	3 cut(s)	263, 321, 589
TfiI	GAWTC	2 cut(s)	119, 628
Tru1I	TTAA	2 cut(s)	195, 512
Tru9I	TTAA	2 cut(s)	195, 512
TscAI	CASTG	2 cut(s)	716, 724
TseI	GCWGC	1 cut(s)	676
TspDTI	ATGAA	1 cut(s)	409
TspRI	CASTG	2 cut(s)	716, 724
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	3 cut(s)	263, 321, 589
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.