Rmu_sc0015236.1_g000003

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015236.1
OG0000225
Physical Location & Seq
Forward (+)
15944 .. 27464
11521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015236.1_g000003.1.cds

Sequence Viewer

Length: 5328 bp
atggatcagtttgcggtgaaggtcgaggaggcgaggccggccgctgatgggaggccgtcggcggggccggtgtatcggagcatttatgctaaagatgggctgttggagttgccggaggggttcgagtcaccgtggcagtttctcagtgactcggttaagaggaacccaagcggtcgaatgcttggtcaacgccaagtcaacgagaagaaggcgggtccatatgtgtggagtacatatcaagaggtctatgatgcagccattcgtatgggttcggccatcagaagccgtggtgtcaatcctggagatcgttgtggtatatatggatcaaattgcccccagtggattattgcaatggaggcctgtaacagccatgcaattacatacgttccactttatgacacccttggtgctaatgcagttgagttcatcatcaaccatgctgaagtttcaatagcttttgttcaagagaacaagatccctgctattatatcatgccttccaaactgttctacgcatttaaaaacaattgtcagcttcacgaatgtttctagcactcaaaagaaggaagcagaagaactgggggtatcttgcttttcgtgggaggaattctttcagttgggaaattcagattatgaactacctcaaaaacagaggactgctgtttgcacaataatgtatacaagtggaacgactggagaaccaaaaggcgtaatcattactaatgcggcattaatgtcagaagtgttggcaacagaccatatacttttcctaacagatagagtgtgtacggaagaagattcatatttttcgtttctcccgttggcccatatatatgaccaaataatcgagagctattgcatctacaagggatcttcaataggcttctggcgaggcgatgtcaggtttttactggacgaccttcaggaactaaagcctactatgttttgtggggttcctcgagtttatgatcgtatatacactggtattgcttgtaaagttttatctggtggtgtgctgaggaagacccttttccagtatgcatataactacaaattgtcaaatctggagaagggtttaccacaagaaaaagcggcacctctcttggacaagcttgtatttgacaagataaaacaagcattaggaggacgagttcgtataatgttgtctggtgctgcgcctttgcccaggcatgtggaggaatttttgagggtcaccagctgcagcactttatcacaaggatatggccttactgaaagctgtggtggctgttttacgtccattggcaatgtttatcctatgattgggactgtgggtgtccccttgacaactattgaagcacggcttgagtcggtcccagaactgggatatgatgcactctctagtgtgccacgtggagagatttgcctaagaggaaaaaccttgttttctggttaccacaagcgactagatctcactgaagaagtccttattgatgggtggttccatacaggtgatattggagaatggcagccgaatggagcaatgaaagttatagacaggaaaaagaacatatttaaactgtctcaaggtgaatatgttgctgtggaaagcattgaaagcatatacttgcaatgccccattatcacatcgatttgggtttatgggaacagcttcgagtcatttcttgttgctgtggttgttcctgagagaaaggccttggaggactgggcagctgagcatcatttgactgatgcctacaaatcattgtgtcaaaatatgaaggcaagaaaatacattttggatgagctcaatagtatggggtttgagttgttaaaagcagttcatttggaaccaaacccctttgacatagagagggatctcatgactccaactttcaaactgaaaagaccacaattactcaaatattacaaggaccaagttgaaaaactttatagtgaagcaaagggtcatttgcacagaaatttggttcaaagggggatcaatactttcatagatgatgatgatcttccaagaggagaggaaatatcagaagcacttctccgagccattgaaggatcaaagcactctctcattgtgttctctgaaaactatgcatcctcaaagtggtgtttggatgaactggttcatatccttggatgtagaagattaaagaaacaaatggtttggccaatcttttacaaagtggatccctcggacgtaagacaccaaagaggcacatttagtgaggcacttgcggcgcatgatggccgattcaagaacaaggtgttaagatggagagaagctctttcagaagcagcaaatttatctgggtggcatttcccgggcgggcatgaatatgaatctaaatttattgatagaatcattaaagagatttctgcacaagtaatgaaacatacccctttgaatgtggcaaagtttccagtcgggatagaatctcgtgtacaagacatgcttgaactcttagatgttgggggaagtgatgtacgcatggtagggatatggggaagtggtggaatagggaagacaacaattgctaaagctgtttacaatacaatcgtccatgagtttgaagatagttgctttttggcaaatgttagagaacgttccgagccacatgaaggtctagtcaatctacaaaacattattctttcaaagattgtagggggcaaagaactgaaagtaatcaatgttgatgaaggaatcaatttgttgcgtgaaaggttgagaaataaaaggattatgttaattcttgatgatgtgaataaattggaccagttagatgcattagccggagcacctgattggtttggttctggcactagagttataataacaacaagagataagcgtttgtttgttcacgatgtcaatcatatatacaaggccagaaaactagatcatcacgaaggttttgagctcttcaattcaaatgccttcaagaataagaggaatttagatgacaatgagaagctcttagttagtactgttgttgaatattctcaaggccttccgttagtcctggtaattttgggttcacatctatgtggtagacctatacatgaatggcaagctatgttagatggttataaaagaaatcttcccaaagacattcaagatattctcaaagtcagttatgatggactggaagaaacagtgaaagaagttttcctcgacattgcttgtttcttcaaatgtaggaatacaagggttgtgatacatatactcgaagattgtgaccgcaacaaccccaagcatagtattgaagttctcgaagaaaaggcactcataaatgttgatgatggttgtgtttccatgcatgatttgctagaagagatgggaaaagctatagctcggcaagagtctacaaagcttggtgagcgaagcagattgtggcatcataaggatgtgcgtgatgttctaacaggaaacacgggaacaagtaaaactgaaggtatagtgataaaaatgcctatagcagatgagatatgcttgaatcctaaatgcttcaaaaagatgagaaatcttaaaattttcataaacatcaatggacggttttgtggaaaggttgattattatccgaatcagttgcggttacttgaatggcgtgattgtccgctaaaattttttccccgcaattttaacatgaagaatctaattcaacttgatatgcctcgtagctgcatctcacgtttcgagagtatggaaaatctgaaatccttaaatttgagtggatgtaaattcctagcacaaagcccagatctgtctggaagcccaaacttagagttcctgaatctaaggttttgtaaaattttaaagaaggttcacccttcggttggatccctcaaaaagcttgttcgcctggatctttacagatgctctaaccttgtgaggctaccaggagaagtcaactggagatccctccgatacattaatctcgactggtgcacaaggctggagagtttccctgaaattgagggagagatgaaatacatgacatccttgtggctatccaacactgccatcaaagcattgccttcatccattggatatctaataaaccttggttttttgaggttagaaaattgtggaaacctcacagatctaccttgcagcatttatgaattgcagaagttaagttacgtttcattctccgggtgcccaaaactcgtaagattcccaaataaggtggagtctgaagtgcttccaacttactcaaaggtttcacatgacaatatccgtgactctctatcgaaaagaaagataaagagtgatgaaggcagttcattggagccagagccagacactgaattcaattcggcgcttccttcgctagattacttcgacgcgcatcgatgcaatttgtctaatattgatttcctcgcgtcccttgattgtgcatccactttaaggcaacttaatttatcaggaagcccctttgttattcttcccgaatgcatcaacaaatttgtcaacttgagggaactcaatttgagcggctgcacgaggctcgtagaaattccagagcttccaccaaggattcgcctgttgaatgtgagggattgcgtatcattggagagaatttcaaagttgtcaaacattttggagcgtaaagaatcacaaataatgattgagaagatggacttgactaattgctggagactctgtcaaaatttggttgagatggcaaacaaggatgatgatgatcaagtgcacgctgatctcttctctcgactcctatcttctcagcaatccaaattcacaattaaatttccagttccaagaagccaggttccaaagtggttcagctgtcaaatggatttcatggggcatctacggtttgaattttgtatcgaaacacttgcaaatttcaaatgggacaacacaggattggctctctgtgttgctgttcatcaaaaggtgcaagatactctctggttgtgcgtccatattcacataaatgaagtaagtgtttcaactctccccgaccagtggtttcgttcagcagagtcggatcatgtgtggctgcactatgttcccttccttgaaatgtggccacttggttatatgcgtccattgcccccttttacgtgtcgagtctttatttatcaagatgaggattctctgtcctccataaaaagctgtggtgtccaccttgtaatgccacccaatgaagacgtttctatgcagctaatccgtgcagagaacctcaccaatgaactttctcatgatgaacttgaaaaggacttctgggacaattatcgtcccaaacagaggactgactgcaaagaattatctactgatgcacaactggagaacgaaaagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

1775

Amino Acids

202.16

Weight (kDa)

6.32

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2828, 3087
AccB1I GGYRCC 2 cut(s) 1093, 4155
AccBSI CCGCTC 1 cut(s) 4494
AccI GTMKAC 3 cut(s) 677, 3049, 3362
AccII CGCG 2 cut(s) 4346, 4382
AclI AACGTT 1 cut(s) 2602
AcoI YGGCCR 5 cut(s) 39, 273, 2165, 2245, 5051
AcuI CTGAAG 5 cut(s) 462, 905, 1476, 3468, 4215
AcvI CACGTG 1 cut(s) 1391
AfaI GTAC 5 cut(s) 232, 787, 2442, 2484, 2983
AflIII ACRYGT 1 cut(s) 5087
AjnI CCWGG 6 cut(s) 298, 1184, 3018, 3858, 3895, 4785
AloI GAACNNNNNNTCC 2 cut(s) 1134, 1166
Alw21I GWGCWC 5 cut(s) 1788, 2797, 2919, 3947, 4713
Alw26I GTCTC 2 cut(s) 1566, 4651
Alw44I GTGCAC 2 cut(s) 3943, 4709
AlwNI CAGNNNCTG 1 cut(s) 4304
Ama87I CYCGRG 2 cut(s) 957, 2320
ApaLI GTGCAC 2 cut(s) 3943, 4709
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AseI ATTAAT 2 cut(s) 731, 3930
Asp700I GAANNNNTTC 5 cut(s) 609, 1649, 2034, 2121, 4200
AspLEI GCGC 4 cut(s) 1177, 2239, 4321, 4348
AspS9I GGNCC 6 cut(s) 65, 215, 823, 1351, 1912, 2770
AsuC2I CCSGG 3 cut(s) 2321, 2322, 4153
AsuHPI GGTGA 8 cut(s) 28, 120, 1204, 1502, 1580, 3386, 3815, 5200
AvaI CYCGRG 2 cut(s) 957, 2320
AvaII GGWCC 4 cut(s) 215, 1351, 1912, 2770
BaeGI GKGCMC 3 cut(s) 3947, 4160, 4713
BalI TGGCCA 2 cut(s) 2167, 5053
BamHI GGATCC 2 cut(s) 2185, 3836
BanI GGYRCC 2 cut(s) 1093, 4155
BanII GRGCYC 2 cut(s) 1788, 2919
BarI GAAGNNNNNNTAC 2 cut(s) 4121, 4153
BauI CACGAG 2 cut(s) 2436, 4501
BbrPI CACGTG 1 cut(s) 1391
BbsI GAAGAC 3 cut(s) 1028, 2528, 5178
Bbv12I GWGCWC 5 cut(s) 1788, 2797, 2919, 3947, 4713
BbvCI CCTCAGC 1 cut(s) 1016
BceAI ACGGC 3 cut(s) 40, 270, 1355
BcgI CGANNNNNNTGC 6 cut(s) 3568, 3602, 4489, 4523, 4841, 4875
BciT130I CCWGG 6 cut(s) 300, 1186, 3020, 3860, 3897, 4787
BclI TGATCA 1 cut(s) 4702
BcnI CCSGG 3 cut(s) 2321, 2322, 4153
BcoDI GTCTC 2 cut(s) 1566, 4651
BfaI CTAG 9 cut(s) 549, 1380, 1445, 2624, 2820, 2894, 3326, 3743, 4331
BfmI CTRYAG 3 cut(s) 1219, 3345, 3471
BfoI RGCGCY 1 cut(s) 4322
BglII AGATCT 3 cut(s) 1447, 3757, 4099
BlpI GCTNAGC 1 cut(s) 1713
BmcAI AGTACT 1 cut(s) 2983
Bme1390I CCNGG 9 cut(s) 300, 1186, 2321, 2322, 3020, 3860, 3897, 4153, 4787
Bme18I GGWCC 4 cut(s) 215, 1351, 1912, 2770
BmeT110I CYCGRG 2 cut(s) 957, 2320
BmgT120I GGNCC 6 cut(s) 65, 215, 823, 1351, 1912, 2770
BmrFI CCNGG 9 cut(s) 300, 1186, 2321, 2322, 3020, 3860, 3897, 4153, 4787
BmrI ACTGGG 4 cut(s) 331, 587, 1370, 1714
BmuI ACTGGG 4 cut(s) 331, 587, 1370, 1714
BpiI GAAGAC 3 cut(s) 1028, 2528, 5178
BplI GAGNNNNNCTC 2 cut(s) 2266, 2298
BpmI CTGGAG 6 cut(s) 321, 714, 1085, 3931, 3974, 4675
Bpu10I CCTNAGC 1 cut(s) 1016
Bpu1102I GCTNAGC 1 cut(s) 1713
BpuEI CTTGAG 4 cut(s) 1364, 1548, 2985, 4495
BpuMI CCSGG 3 cut(s) 2321, 2322, 4153
Bsa29I ATCGAT 2 cut(s) 1628, 4351
BsaAI YACGTR 2 cut(s) 1391, 5088
BsaBI GATNNNNATC 4 cut(s) 2001, 2868, 3573, 4701
BsaXI ACNNNNNCTCC 4 cut(s) 1134, 1164, 4648, 4678
Bse118I RCCGGY 2 cut(s) 37, 67
Bse3DI GCAATG 7 cut(s) 357, 1291, 1527, 1616, 3174, 4028, 5072
Bse8I GATNNNNATC 4 cut(s) 2001, 2868, 3573, 4701
BseBI CCWGG 6 cut(s) 300, 1186, 3020, 3860, 3897, 4787
BseCI ATCGAT 2 cut(s) 1628, 4351
BseJI GATNNNNATC 4 cut(s) 2001, 2868, 3573, 4701
BseMI GCAATG 7 cut(s) 357, 1291, 1527, 1616, 3174, 4028, 5072
BseMII CTCAG 5 cut(s) 157, 1007, 1674, 1704, 4757
BseRI GAGGAG 2 cut(s) 41, 2028
BseSI GKGCMC 3 cut(s) 3947, 4160, 4713
BseX3I CGGCCG 1 cut(s) 39
BsgI GTGCAG 4 cut(s) 2361, 4483, 5009, 5217
Bsh1236I CGCG 2 cut(s) 4346, 4382
Bsh1285I CGRYCG 2 cut(s) 42, 175
BshNI GGYRCC 2 cut(s) 1093, 4155
BshVI ATCGAT 2 cut(s) 1628, 4351
BsiEI CGRYCG 2 cut(s) 42, 175
BsiHKAI GWGCWC 5 cut(s) 1788, 2797, 2919, 3947, 4713
BsiHKCI CYCGRG 2 cut(s) 957, 2320
BsiSI CCGG 6 cut(s) 38, 68, 113, 2321, 2790, 4152
BslFI GGGAC 7 cut(s) 1301, 1318, 1337, 4369, 4889, 5247, 5264
BsmAI GTCTC 2 cut(s) 1566, 4651
BsmFI GGGAC 7 cut(s) 1301, 1318, 1337, 4369, 4889, 5247, 5264
BsmI GAATGC 2 cut(s) 183, 4457
BsoBI CYCGRG 2 cut(s) 957, 2320
Bsp1286I GDGCHC 6 cut(s) 1788, 2797, 2919, 3947, 4160, 4713
Bsp1407I TGTACA 1 cut(s) 2440
Bsp1720I GCTNAGC 1 cut(s) 1713
BspCNI CTCAG 5 cut(s) 156, 1008, 1675, 1705, 4756
BspDI ATCGAT 2 cut(s) 1628, 4351
BspFNI CGCG 2 cut(s) 4346, 4382
BspHI TCATGA 2 cut(s) 1860, 5224
BspMAI CTGCAG 1 cut(s) 1223
BspQI GCTCTTC 1 cut(s) 2924
BspT107I GGYRCC 2 cut(s) 1093, 4155
BsrBI CCGCTC 1 cut(s) 4494
BsrDI GCAATG 7 cut(s) 357, 1291, 1527, 1616, 3174, 4028, 5072
BsrFI RCCGGY 2 cut(s) 37, 67
BsrGI TGTACA 1 cut(s) 2440
BssAI RCCGGY 2 cut(s) 37, 67
BssNAI GTATAC 1 cut(s) 678
BssSI CACGAG 2 cut(s) 2436, 4501
BssT1I CCWWGG 5 cut(s) 403, 1695, 2131, 4060, 4532
Bst1107I GTATAC 1 cut(s) 678
Bst2BI CACGAG 2 cut(s) 2436, 4501
Bst2UI CCWGG 6 cut(s) 300, 1186, 3020, 3860, 3897, 4787
Bst4CI ACNGT 8 cut(s) 132, 506, 1309, 1560, 2986, 3154, 3552, 4836
Bst6I CTCTTC 3 cut(s) 2924, 3324, 4727
BstAPI GCANNNNNTGC 1 cut(s) 3322
BstAUI TGTACA 1 cut(s) 2440
BstBAI YACGTR 2 cut(s) 1391, 5088
BstC8I GCNNGC 4 cut(s) 39, 2327, 3069, 4713
BstDSI CCRYGG 2 cut(s) 131, 286
BstEII GGTNACC 2 cut(s) 1210, 1430
BstFNI CGCG 2 cut(s) 4346, 4382
BstH2I RGCGCY 1 cut(s) 4322
BstHHI GCGC 4 cut(s) 1177, 2239, 4321, 4348
BstMAI GTCTC 2 cut(s) 1566, 4651
BstMCI CGRYCG 2 cut(s) 42, 175
BstNI CCWGG 6 cut(s) 300, 1186, 3020, 3860, 3897, 4787
BstNSI RCATGY 2 cut(s) 1193, 2452
BstPI GGTNACC 2 cut(s) 1210, 1430
BstSCI CCNGG 9 cut(s) 298, 1184, 2319, 2320, 3018, 3858, 3895, 4151, 4785
BstSFI CTRYAG 3 cut(s) 1219, 3345, 3471
BstSLI GKGCMC 3 cut(s) 3947, 4160, 4713
BstUI CGCG 2 cut(s) 4346, 4382
BstV2I GAAGAC 3 cut(s) 1028, 2528, 5178
BstXI CCANNNNNNTGG 3 cut(s) 225, 265, 1192
BstZ17I GTATAC 1 cut(s) 678
BstZI CGGCCG 1 cut(s) 39
Bsu15I ATCGAT 2 cut(s) 1628, 4351
BsuTUI ATCGAT 2 cut(s) 1628, 4351
BtgI CCRYGG 2 cut(s) 131, 286
BtgZI GCGATG 1 cut(s) 909
BtsI GCAGTG 1 cut(s) 4014
BtsIMutI CAGTG 8 cut(s) 151, 344, 978, 1452, 3159, 4014, 4302, 4994
Cac8I GCNNGC 4 cut(s) 39, 2327, 3069, 4713
CaiI CAGNNNCTG 1 cut(s) 4304
CciI TCATGA 2 cut(s) 1860, 5224
CfoI GCGC 4 cut(s) 1177, 2239, 4321, 4348
Cfr10I RCCGGY 2 cut(s) 37, 67
Cfr13I GGNCC 6 cut(s) 65, 215, 823, 1351, 1912, 2770
Cfr9I CCCGGG 1 cut(s) 2320
ClaI ATCGAT 2 cut(s) 1628, 4351
CseI GACGC 4 cut(s) 4352, 4371, 4930, 5057
Csp6I GTAC 5 cut(s) 231, 786, 2441, 2483, 2982
CspCI CAANNNNNGTGG 2 cut(s) 4167, 4202
CviQI GTAC 5 cut(s) 231, 786, 2441, 2483, 2982
DraI TTTAAA 3 cut(s) 519, 1555, 3813
EaeI YGGCCR 5 cut(s) 39, 273, 2165, 2245, 5051
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 3 cut(s) 2924, 3324, 4727
EarI CTCTTC 3 cut(s) 2924, 3324, 4727
Ecl136II GAGCTC 2 cut(s) 1786, 2917
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 5 cut(s) 403, 1695, 2131, 4060, 4532
Eco147I AGGCCT 3 cut(s) 359, 1694, 3006
Eco24I GRGCYC 2 cut(s) 1788, 2919
Eco32I GATATC 1 cut(s) 4049
Eco47I GGWCC 4 cut(s) 215, 1351, 1912, 2770
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 2 cut(s) 1786, 2917
Eco57I CTGAAG 5 cut(s) 462, 905, 1476, 3468, 4215
Eco72I CACGTG 1 cut(s) 1391
Eco88I CYCGRG 2 cut(s) 957, 2320
Eco91I GGTNACC 2 cut(s) 1210, 1430
EcoICRI GAGCTC 2 cut(s) 1786, 2917
EcoO65I GGTNACC 2 cut(s) 1210, 1430
EcoRI GAATTC 2 cut(s) 605, 4307
EcoRII CCWGG 6 cut(s) 298, 1184, 3018, 3858, 3895, 4785
EcoRV GATATC 1 cut(s) 4049
EcoT14I CCWWGG 5 cut(s) 403, 1695, 2131, 4060, 4532
EcoT22I ATGCAT 5 cut(s) 1042, 2095, 2785, 3318, 4457
EcoT38I GRGCYC 2 cut(s) 1788, 2919
ErhI CCWWGG 5 cut(s) 403, 1695, 2131, 4060, 4532
FalI AAGNNNNNCTT 8 cut(s) 1326, 1358, 1449, 1481, 2436, 2468, 4625, 4657
FaqI GGGAC 7 cut(s) 1301, 1318, 1337, 4369, 4889, 5247, 5264
FauI CCCGC 4 cut(s) 55, 205, 2318, 3638
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 4702
FblI GTMKAC 3 cut(s) 677, 3049, 3362
FriOI GRGCYC 2 cut(s) 1788, 2919
FseI GGCCGGCC 1 cut(s) 41
FspBI CTAG 9 cut(s) 549, 1380, 1445, 2624, 2820, 2894, 3326, 3743, 4331
GlaI GCGC 4 cut(s) 1176, 2238, 4320, 4347
GsuI CTGGAG 6 cut(s) 321, 714, 1085, 3931, 3974, 4675
HaeII RGCGCY 1 cut(s) 4322
HapII CCGG 6 cut(s) 38, 68, 113, 2321, 2790, 4152
HgaI GACGC 4 cut(s) 4352, 4371, 4930, 5057
HhaI GCGC 4 cut(s) 1177, 2239, 4321, 4348
Hin6I GCGC 4 cut(s) 1175, 2237, 4319, 4346
HinP1I GCGC 4 cut(s) 1175, 2237, 4319, 4346
HincII GTYRAC 4 cut(s) 188, 199, 3907, 4471
HindII GTYRAC 4 cut(s) 188, 199, 3907, 4471
HindIII AAGCTT 3 cut(s) 1109, 3368, 3848
HpaII CCGG 6 cut(s) 38, 68, 113, 2321, 2790, 4152
HphI GGTGA 8 cut(s) 28, 120, 1204, 1502, 1580, 3386, 3815, 5200
Hpy99I CGWCG 2 cut(s) 61, 4346
HpyCH4III ACNGT 8 cut(s) 132, 506, 1309, 1560, 2986, 3154, 3552, 4836
HpyCH4IV ACGT 9 cut(s) 384, 1274, 1390, 2196, 2602, 3688, 4140, 5087, 5175
HpySE526I ACGT 9 cut(s) 384, 1274, 1390, 2196, 2602, 3688, 4140, 5087, 5175
HspAI GCGC 4 cut(s) 1175, 2237, 4319, 4346
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 4702
LguI GCTCTTC 1 cut(s) 2924
LmnI GCTCC 5 cut(s) 78, 1517, 2792, 4288, 4603
MaeI CTAG 9 cut(s) 549, 1380, 1445, 2624, 2820, 2894, 3326, 3743, 4331
MaeII ACGT 9 cut(s) 384, 1274, 1390, 2196, 2602, 3688, 4140, 5087, 5175
MaeIII GTNAC 9 cut(s) 126, 146, 362, 1210, 1430, 3233, 3591, 4136, 4238
MbiI CCGCTC 1 cut(s) 4494
MfeI CAATTG 2 cut(s) 525, 2529
MhlI GDGCHC 6 cut(s) 1788, 2797, 2919, 3947, 4160, 4713
MlsI TGGCCA 2 cut(s) 2167, 5053
MluNI TGGCCA 2 cut(s) 2167, 5053
MmeI TCCRAC 6 cut(s) 84, 1892, 3814, 4035, 4229, 4989
Mox20I TGGCCA 2 cut(s) 2167, 5053
Mph1103I ATGCAT 5 cut(s) 1042, 2095, 2785, 3318, 4457
MroNI GCCGGC 1 cut(s) 37
MroXI GAANNNNTTC 5 cut(s) 609, 1649, 2034, 2121, 4200
MscI TGGCCA 2 cut(s) 2167, 5053
Msp20I TGGCCA 2 cut(s) 2167, 5053
MspA1I CMGCKG 4 cut(s) 44, 1218, 1712, 4806
MspI CCGG 6 cut(s) 38, 68, 113, 2321, 2790, 4152
MspR9I CCNGG 9 cut(s) 300, 1186, 2321, 2322, 3020, 3860, 3897, 4153, 4787
MunI CAATTG 2 cut(s) 525, 2529
Mva1269I GAATGC 2 cut(s) 183, 4457
MvaI CCWGG 6 cut(s) 300, 1186, 3020, 3860, 3897, 4787
MvnI CGCG 2 cut(s) 4346, 4382
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 3 cut(s) 2321, 2322, 4153
NdeI CATATG 1 cut(s) 220
NgoMIV GCCGGC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 3331
NmuCI GTSAC 5 cut(s) 126, 146, 1210, 3233, 4238
NsiI ATGCAT 5 cut(s) 1042, 2095, 2785, 3318, 4457
NspI RCATGY 2 cut(s) 1193, 2452
PaeR7I CTCGAG 1 cut(s) 957
PagI TCATGA 2 cut(s) 1860, 5224
PceI AGGCCT 3 cut(s) 359, 1694, 3006
PciSI GCTCTTC 1 cut(s) 2924
PcsI WCGNNNNNNNCGW 1 cut(s) 815
PctI GAATGC 2 cut(s) 183, 4457
PdiI GCCGGC 1 cut(s) 39
PdmI GAANNNNTTC 5 cut(s) 609, 1649, 2034, 2121, 4200
PflFI GACNNNGTC 1 cut(s) 4662
PfoI TCCNGGA 1 cut(s) 298
PmaCI CACGTG 1 cut(s) 1391
PmlI CACGTG 1 cut(s) 1391
Ppu21I YACGTR 2 cut(s) 1391, 5088
PshBI ATTAAT 2 cut(s) 731, 3930
PsiI TTATAA 2 cut(s) 2828, 3087
Psp124BI GAGCTC 2 cut(s) 1788, 2919
Psp1406I AACGTT 1 cut(s) 2602
Psp6I CCWGG 6 cut(s) 298, 1184, 3018, 3858, 3895, 4785
PspCI CACGTG 1 cut(s) 1391
PspEI GGTNACC 2 cut(s) 1210, 1430
PspGI CCWGG 6 cut(s) 298, 1184, 3018, 3858, 3895, 4785
PspPI GGNCC 6 cut(s) 65, 215, 823, 1351, 1912, 2770
PspXI VCTCGAGB 1 cut(s) 957
PstI CTGCAG 1 cut(s) 1223
PstNI CAGNNNCTG 1 cut(s) 4304
PsyI GACNNNGTC 1 cut(s) 4662
PvuII CAGCTG 3 cut(s) 1218, 1712, 4806
RigI GGCCGGCC 1 cut(s) 41
RsaI GTAC 5 cut(s) 232, 787, 2442, 2484, 2983
RsaNI GTAC 5 cut(s) 231, 786, 2441, 2483, 2982
SacI GAGCTC 2 cut(s) 1788, 2919
SapI GCTCTTC 1 cut(s) 2924
Sau96I GGNCC 6 cut(s) 65, 215, 823, 1351, 1912, 2770
ScaI AGTACT 1 cut(s) 2983
ScrFI CCNGG 9 cut(s) 300, 1186, 2321, 2322, 3020, 3860, 3897, 4153, 4787
SduI GDGCHC 6 cut(s) 1788, 2797, 2919, 3947, 4160, 4713
SfcI CTRYAG 3 cut(s) 1219, 3345, 3471
Sfr274I CTCGAG 1 cut(s) 957
SinI GGWCC 4 cut(s) 215, 1351, 1912, 2770
SlaI CTCGAG 1 cut(s) 957
SmaI CCCGGG 1 cut(s) 2322
SmlI CTYRAG 5 cut(s) 957, 1343, 1563, 3000, 4474
SmoI CTYRAG 5 cut(s) 957, 1343, 1563, 3000, 4474
SseBI AGGCCT 3 cut(s) 359, 1694, 3006
SspI AATATT 3 cut(s) 1904, 2996, 4369
SspMI CTAG 9 cut(s) 549, 1380, 1445, 2624, 2820, 2894, 3326, 3743, 4331
SstI GAGCTC 2 cut(s) 1788, 2919
StuI AGGCCT 3 cut(s) 359, 1694, 3006
StyD4I CCNGG 9 cut(s) 298, 1184, 2319, 2320, 3018, 3858, 3895, 4151, 4785
StyI CCWWGG 5 cut(s) 403, 1695, 2131, 4060, 4532
TaaI ACNGT 8 cut(s) 132, 506, 1309, 1560, 2986, 3154, 3552, 4836
TaiI ACGT 9 cut(s) 387, 1277, 1393, 2199, 2605, 3691, 4143, 5090, 5178
TaqII GACCGA 1 cut(s) 1339
TatI WGTACW 3 cut(s) 230, 2440, 2981
TauI GCSGC 5 cut(s) 44, 728, 1094, 2237, 4497
TscAI CASTG 8 cut(s) 151, 344, 985, 1459, 3159, 4021, 4309, 4994
TseFI GTSAC 5 cut(s) 126, 146, 1210, 3233, 4238
Tsp45I GTSAC 5 cut(s) 126, 146, 1210, 3233, 4238
TspGWI ACGGA 4 cut(s) 803, 3000, 4226, 5183
TspMI CCCGGG 1 cut(s) 2320
TspRI CASTG 8 cut(s) 151, 344, 985, 1459, 3159, 4021, 4309, 4994
Tth111I GACNNNGTC 1 cut(s) 4662
VneI GTGCAC 2 cut(s) 3943, 4709
VpaK11BI GGWCC 4 cut(s) 215, 1351, 1912, 2770
VspI ATTAAT 2 cut(s) 731, 3930
XceI RCATGY 2 cut(s) 1193, 2452
XhoI CTCGAG 1 cut(s) 957
XmaI CCCGGG 1 cut(s) 2320
XmiI GTMKAC 3 cut(s) 677, 3049, 3362
XmnI GAANNNNTTC 5 cut(s) 609, 1649, 2034, 2121, 4200
XspI CTAG 9 cut(s) 549, 1380, 1445, 2624, 2820, 2894, 3326, 3743, 4331
ZrmI AGTACT 1 cut(s) 2983
Zsp2I ATGCAT 5 cut(s) 1042, 2095, 2785, 3318, 4457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.