Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006655.1

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006655.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 160 bp

gacttcagggtgttcatttcaaattggaccaatcttgattgtggacgagccctttacgattgatagtggcttgatgactccaactatgaaaattcgaagagacaaagttgtggcacagttcaaggaacaaatagatgaactctacaagaaaaattcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

52

Amino Acids

5.89

Weight (kDa)

5.99

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	91, 152
AgsI	TTSAA	2 cut(s)	21, 122
Alw26I	GTCTC	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	91, 152
AspS9I	GGNCC	1 cut(s)	27
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	27
CviJI	RGCY	2 cut(s)	50, 70
CviKI_1	RGCY	2 cut(s)	50, 70
DdeI	CTNAG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	52
FaiI	YATR	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	52
FspEI	CC	9 cut(s)	10, 27, 43, 52, 64, 65, 94, 96, 108
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	157
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	3 cut(s)	22, 91, 152
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	105
NspV	TTCGAA	1 cut(s)	95
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	95
SgeI	CNNG	5 cut(s)	19, 47, 59, 83, 134
SinI	GGWCC	1 cut(s)	27
Sse9I	AATT	3 cut(s)	22, 91, 152
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	22, 91, 152
TspDTI	ATGAA	3 cut(s)	4, 102, 151
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	91, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.