Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

20856235 .. 20861411

Gene Structure 5177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAGGAACTAGCACATTTTGTCCCTAATCTTATGCATGGTATCCAAGTTCTGACAGAGAAGGCCTTCATAAATATTGGAGCAAGTCATGCAGTATGTATAGCTAAAGACATCATGAAGAAGTGGTCTAAACCAGATGAGATACCATTCAGTACTACTGATGGTTCCAAAAGTGGTTCGACTGTCAAATGGATTTCAAGGGGTTTCGACTATTTGGATTCTCTATTCAAATTCTTCAAAATTTCAAATGGGAGAACAAAATTGGCTTTTTGTGTTCCTGTCGATTCTTCTACTGGTTGCTCTTTCCAGACCTTACTGAAAGCTGCGGTTGGTTTCCCCTTGATAACTATTGAAGCATGGCTTGAGTTGGTCCCAGAACTAGGGTATGATGCAATTTCTAGTGTGCCACGTGGAGAGATTTGCCGAAGAGGAAAAACCTTGTTTTCTGGTTACCACATACAAGATCTAACTAAAGATGGGCTGTTGGAATTGCCGGAGGGGTTGGAGTCACTGTGGCAGTTTCTCAGTGACTCTGCTAAGAGGAACCTAAGCGGTCGAATGCTTGGTCAACGCCAAGTCAACGAGAAGAAGACAAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

200

Amino Acids

22.27

Weight (kDa)

9.02

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	326, 552
AcsI	RAATTY	3 cut(s)	230, 240, 597
AcvI	CACGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	5 cut(s)	198, 229, 238, 246, 353
AluBI	AGCT	2 cut(s)	104, 323
AluI	AGCT	2 cut(s)	104, 323
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	230, 240, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BbrPI	CACGTG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	155, 470
BciVI	GTATCC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	11, 380, 399
BfuI	GTATCC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmcAI	AGTACT	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	3 cut(s)	166, 372, 545
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	538
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	2 cut(s)	8, 356
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	8, 356
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	463
BspACI	CCGC	2 cut(s)	326, 552
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	166, 372, 545
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	184, 513
Bst6I	CTCTTC	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	524, 537, 548
BstEII	GGTNACC	1 cut(s)	449
BstKTI	GATC	1 cut(s)	466
BstMBI	GATC	1 cut(s)	463
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	509, 532
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	4 cut(s)	38, 89, 115, 357
CviJI	RGCY	6 cut(s)	65, 104, 266, 323, 361, 481
CviKI_1	RGCY	6 cut(s)	65, 104, 266, 323, 361, 481
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	3 cut(s)	524, 537, 548
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco147I	AGGCCT	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	370
Eco72I	CACGTG	1 cut(s)	410
Eco91I	GGTNACC	1 cut(s)	449
EcoO65I	GGTNACC	1 cut(s)	449
EcoT22I	ATGCAT	1 cut(s)	39
FaeI	CATG	4 cut(s)	41, 92, 118, 360
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	8, 356
FatI	CATG	4 cut(s)	37, 88, 114, 356
Fnu4HI	GCNGC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	3 cut(s)	11, 380, 399
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	494
Hin1II	CATG	4 cut(s)	41, 92, 118, 360
HincII	GTYRAC	2 cut(s)	569, 580
HindII	GTYRAC	2 cut(s)	569, 580
HinfI	GANTC	4 cut(s)	218, 284, 506, 530
HpaII	CCGG	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	569, 580
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	115, 307
Hpy8I	GTNNAC	2 cut(s)	569, 580
HpyAV	CCTTC	2 cut(s)	55, 76
HpyCH4III	ACNGT	2 cut(s)	184, 513
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	3 cut(s)	37, 92, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	3 cut(s)	524, 537, 548
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	4 cut(s)	41, 92, 118, 360
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	147, 279, 291, 320, 387, 432, 507
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	3 cut(s)	11, 380, 399
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	3 cut(s)	449, 507, 527
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	6 cut(s)	130, 226, 279, 438, 598, 601
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	6 cut(s)	230, 240, 260, 393, 488, 597
MlyI	GAGTC	2 cut(s)	515, 524
MmeI	TCCRAC	2 cut(s)	465, 483
MnlI	CCTC	3 cut(s)	422, 490, 534
Mph1103I	ATGCAT	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	1 cut(s)	601
MspI	CCGG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	4 cut(s)	41, 92, 118, 360
NlaIV	GGNNCC	3 cut(s)	166, 372, 545
NmuCI	GTSAC	2 cut(s)	507, 527
NsiI	ATGCAT	1 cut(s)	39
PagI	TCATGA	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	65
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	218, 284
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	2 cut(s)	514, 524
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
PpsI	GAGTC	2 cut(s)	514, 524
Ppu21I	YACGTR	1 cut(s)	410
PspCI	CACGTG	1 cut(s)	410
PspEI	GGTNACC	1 cut(s)	449
PspN4I	GGNNCC	3 cut(s)	166, 372, 545
PspPI	GGNCC	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	601
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	1 cut(s)	370
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	2 cut(s)	515, 524
SetI	ASST	6 cut(s)	106, 314, 325, 412, 440, 549
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	6 cut(s)	230, 240, 260, 393, 488, 597
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	326, 552
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	3 cut(s)	11, 380, 399
StuI	AGGCCT	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	184, 513
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	4 cut(s)	179, 207, 282, 556
TasI	AATT	6 cut(s)	230, 240, 260, 393, 488, 597
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	218, 284
Tru1I	TTAA	1 cut(s)	601
Tru9I	TTAA	1 cut(s)	601
TscAI	CASTG	2 cut(s)	516, 532
TseFI	GTSAC	2 cut(s)	507, 527
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	2 cut(s)	507, 527
TspDTI	ATGAA	3 cut(s)	17, 58, 131
TspRI	CASTG	2 cut(s)	516, 532
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	3 cut(s)	230, 240, 597
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	3 cut(s)	11, 380, 399
ZrmI	AGTACT	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.