Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

51446185 .. 51453404

Gene Structure 7220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTTGTCTGGTGCTGCGTCTTTGCGCAGACATGTGGAGGAATTTTTTAGGGTTACCAGCTGCAGCACTTTATCACAAGGATATGGCCTTACTGAAAGCTGTGGTGGTTGTTTTACATCCATTGGCAATGTCTATCCTATGATCGGAACTGTGGGTGTCCCCTTGACAACTATTGAAGCCCGGCTTGAGTCGGTCCCAGAACAGGGATATGATGTACTTTCTAGTGTGCGACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCACAATCGACAAGATCTCACTGAAGAAGTTTATATTGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTCATGGAGCAATGAAAGTTATAGACAGGAAAAATAACATATCTAAACTGTCTCAAGGTGAAATGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTATCACATCGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATCTGACTGATGACTACAAATCATTGTGTCAAAATCTGAAAGCAAATACATTTTGGATGAGCTCAATATATAGTACGGGTCAGAAACAACATCTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATCGATCTCATGACTCCAACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGACCGAGTTGAAAAACTTTATAGTGAAGCAAAGGGTGGAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

249

Amino Acids

28.15

Weight (kDa)

8.44

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	1 - 93	1.9e-14	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	26
AciI	CCGC	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	216, 571
AfiI	CCNNNNNNNGG	3 cut(s)	143, 202, 203
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	176, 430, 667, 713
AjiI	CACGTC	1 cut(s)	233
AluBI	AGCT	4 cut(s)	60, 99, 488, 558
AluI	AGCT	4 cut(s)	60, 99, 488, 558
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	85, 468
ApeKI	GCWGC	5 cut(s)	14, 60, 63, 349, 485
ApoI	RAATTY	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	193, 703
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	344, 422
AvaII	GGWCC	2 cut(s)	193, 703
BanII	GRGCYC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	4 cut(s)	47, 75, 361, 497
BccI	CCATC	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	61
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	5 cut(s)	15, 61, 64, 350, 486
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	5 cut(s)	16, 62, 65, 351, 487
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	2 cut(s)	193, 703
BmgBI	CACGTC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	193, 703
BmiI	GGNNCC	3 cut(s)	195, 323, 627
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	490
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	206, 390
BpuMI	CCSGG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 202, 203
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	3 cut(s)	133, 369, 451
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	116, 558
BseLI	CCNNNNNNNGG	3 cut(s)	143, 202, 203
BseMI	GCAATG	3 cut(s)	133, 369, 451
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	485
BseXI	GCAGC	4 cut(s)	47, 75, 361, 497
BshFI	GGCC	2 cut(s)	87, 470
BshVI	ATCGAT	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	2 cut(s)	143, 179
BslI	CCNNNNNNNGG	3 cut(s)	143, 202, 203
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	143, 179
BsnI	GGCC	2 cut(s)	87, 470
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	3 cut(s)	141, 289, 646
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	2 cut(s)	87, 470
BspCNI	CTCAG	1 cut(s)	481
BspDI	ATCGAT	1 cut(s)	645
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	3 cut(s)	195, 323, 627
BspMAI	CTGCAG	1 cut(s)	65
BsrDI	GCAATG	3 cut(s)	133, 369, 451
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	3 cut(s)	141, 289, 646
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	151, 402
BstDEI	CTNAG	2 cut(s)	248, 489
BstEII	GGTNACC	2 cut(s)	52, 272
BstF5I	GGATG	2 cut(s)	116, 558
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	144, 292, 649
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	3 cut(s)	141, 289, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	35
BstPI	GGTNACC	2 cut(s)	52, 272
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	4 cut(s)	47, 75, 361, 497
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	87, 470
BsuTUI	ATCGAT	1 cut(s)	645
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	116, 558
BtsIMutI	CAGTG	1 cut(s)	294
CciI	TCATGA	1 cut(s)	651
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	193, 703
ClaI	ATCGAT	1 cut(s)	645
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	215, 570
CviAII	CATG	3 cut(s)	32, 356, 652
CviJI	RGCY	9 cut(s)	60, 87, 99, 179, 184, 352, 470, 488, 558
CviKI_1	RGCY	9 cut(s)	60, 87, 99, 179, 184, 352, 470, 488, 558
CviQI	GTAC	2 cut(s)	215, 570
DdeI	CTNAG	2 cut(s)	248, 489
DpnI	GATC	3 cut(s)	143, 291, 648
DpnII	GATC	3 cut(s)	141, 289, 646
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	193, 703
Eco53kI	GAGCTC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	318
Eco91I	GGTNACC	2 cut(s)	52, 272
EcoICRI	GAGCTC	1 cut(s)	558
EcoO65I	GGTNACC	2 cut(s)	52, 272
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	35, 359, 655
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	2 cut(s)	143, 179
FatI	CATG	3 cut(s)	31, 355, 651
Fnu4HI	GCNGC	5 cut(s)	15, 61, 64, 350, 486
FokI	GGATG	2 cut(s)	103, 565
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	15, 61, 64, 350, 486
FspBI	CTAG	1 cut(s)	222
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	5 cut(s)	15, 61, 64, 350, 486
HaeIII	GGCC	2 cut(s)	87, 470
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	35, 359, 655
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	188, 655
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	344, 422
Hpy188I	TCNGA	4 cut(s)	146, 501, 534, 579
Hpy188III	TCNNGA	1 cut(s)	652
Hpy99I	CGWCG	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	151, 402
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	63, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	248, 489
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	35, 359, 655
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	141, 289, 646
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	8 cut(s)	70, 188, 194, 210, 255, 315, 364, 466
Lsp1109I	GCAGC	4 cut(s)	47, 75, 361, 497
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	52, 272
MalI	GATC	3 cut(s)	143, 291, 648
MboI	GATC	3 cut(s)	141, 289, 646
MboII	GAAGA	2 cut(s)	311, 581
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	2 cut(s)	41, 683
MlyI	GAGTC	2 cut(s)	197, 649
MmeI	TCCRAC	1 cut(s)	683
MnlI	CCTC	5 cut(s)	31, 245, 363, 469, 587
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	60, 488
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	3 cut(s)	141, 289, 646
NlaIII	CATG	3 cut(s)	35, 359, 655
NlaIV	GGNNCC	3 cut(s)	195, 323, 627
NsbI	TGCGCA	1 cut(s)	26
NspI	RCATGY	1 cut(s)	35
PagI	TCATGA	1 cut(s)	651
PceI	AGGCCT	1 cut(s)	470
PciI	ACATGT	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	16, 62, 65, 351, 487
PleI	GAGTC	2 cut(s)	196, 649
PpsI	GAGTC	2 cut(s)	196, 649
PscI	ACATGT	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	560
PspEI	GGTNACC	2 cut(s)	52, 272
PspN4I	GGNNCC	3 cut(s)	195, 323, 627
PspPI	GGNCC	2 cut(s)	193, 703
PstI	CTGCAG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	2 cut(s)	60, 488
RsaI	GTAC	2 cut(s)	216, 571
RsaNI	GTAC	2 cut(s)	215, 570
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	5 cut(s)	15, 61, 64, 350, 486
Sau3AI	GATC	3 cut(s)	141, 289, 646
Sau96I	GGNCC	2 cut(s)	193, 703
SchI	GAGTC	2 cut(s)	197, 649
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	8 cut(s)	62, 101, 235, 263, 334, 412, 490, 560
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	193, 703
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	185, 405
SmoI	CTYRAG	2 cut(s)	185, 405
Sse9I	AATT	2 cut(s)	41, 683
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	1 cut(s)	680
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	151, 402
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	4 cut(s)	283, 463, 592, 645
TaqII	GACCGA	2 cut(s)	181, 720
TasI	AATT	2 cut(s)	41, 683
TatI	WGTACW	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	5 cut(s)	14, 60, 63, 349, 485
TspDTI	ATGAA	2 cut(s)	380, 608
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	193, 703
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.