Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

57596769 .. 57598233

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGTTCAAAACGGAACCGTGTCCTCCGCCGTCGATGCCGGCCGTGTTGCGGTGCAAGGCTGCCACCTACAGCTGCGCAAGGTCGAGGTGAAGCTATAGGAAGTGGTCTGGTCTTGATTGATGAGTTTACTCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCATGTGGAGAGATTTTCCTAAGAGGAAAAACCTTGTTTTCTGGTTATCACAAGCGAGCAGATCTCACTGAAGAAGTCCTTATTGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTGTCACATCGATTTGGGTTTATGGGAACCGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACGGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTGGACTGATGACTACAAATCATTGTGTCAAAACATGAAGGCAAGAAAATACATTTTGGATGAGCTCAATAGTATGGGTCAGAAACAGCAACTTCGAGGGTTTGTGTTGTTAAAAGCAGTTCATGTGGAACCAAACCCCTTTGACATGGAGAGGGATCTCATGACCCCAACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGATCAAGTTGAAAAACTTTATAGTGAAGCAAATAGTGGAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

252

Amino Acids

28.73

Weight (kDa)

8.63

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	78
AciI	CCGC	4 cut(s)	28, 51, 427, 689
AclWI	GGATC	2 cut(s)	663, 720
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	50, 140
AgsI	TTSAA	4 cut(s)	9, 374, 676, 722
AluBI	AGCT	4 cut(s)	74, 95, 491, 565
AluI	AGCT	4 cut(s)	74, 95, 491, 565
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	663, 720
AoxI	GGCC	2 cut(s)	41, 471
ApeKI	GCWGC	4 cut(s)	61, 74, 286, 488
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	101, 281, 359
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	48, 61, 298, 500
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	2 cut(s)	15, 28
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	69, 96
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	4 cut(s)	62, 75, 287, 489
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	4 cut(s)	63, 76, 288, 490
BmiI	GGNNCC	4 cut(s)	17, 260, 425, 630
BmrI	ACTGGG	2 cut(s)	149, 493
BmsI	GCATC	3 cut(s)	26, 139, 505
BmuI	ACTGGG	2 cut(s)	149, 493
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 140
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	144, 488
Bse3DI	GCAATG	2 cut(s)	306, 395
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	50, 140
BseMI	GCAATG	2 cut(s)	306, 395
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	144, 488
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	4 cut(s)	48, 61, 298, 500
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	43, 473
BshVI	ATCGAT	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	50, 140
BsmAI	GTCTC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	43, 473
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	226, 655, 712
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	4 cut(s)	28, 51, 427, 689
BspANI	GGCC	2 cut(s)	43, 473
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	4 cut(s)	17, 260, 425, 630
BspPI	GGATC	2 cut(s)	663, 720
BsrDI	GCAATG	2 cut(s)	306, 395
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	144, 488
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	3 cut(s)	226, 655, 712
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	20, 339
BstC8I	GCNNGC	2 cut(s)	41, 222
BstDEI	CTNAG	2 cut(s)	185, 492
BstF5I	GGATG	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	3 cut(s)	229, 658, 715
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	226, 655, 712
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 375
BstSFI	CTRYAG	2 cut(s)	69, 96
BstV1I	GCAGC	4 cut(s)	48, 61, 298, 500
BstX2I	RGATCY	2 cut(s)	226, 655
BstYI	RGATCY	2 cut(s)	226, 655
BstZI	CGGCCG	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	43, 473
BsuTUI	ATCGAT	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	41, 222
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	407
CviAII	CATG	5 cut(s)	168, 535, 623, 646, 661
CviJI	RGCY	8 cut(s)	43, 61, 74, 95, 289, 473, 491, 565
CviKI_1	RGCY	8 cut(s)	43, 61, 74, 95, 289, 473, 491, 565
DdeI	CTNAG	2 cut(s)	185, 492
DpnI	GATC	3 cut(s)	228, 657, 714
DpnII	GATC	3 cut(s)	226, 655, 712
DraI	TTTAAA	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	565
EclXI	CGGCCG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	567
Eco52I	CGGCCG	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	5 cut(s)	171, 538, 626, 649, 664
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	5 cut(s)	167, 534, 622, 645, 660
Fnu4HI	GCNGC	4 cut(s)	62, 75, 287, 489
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	4 cut(s)	62, 75, 287, 489
FspBI	CTAG	1 cut(s)	159
FspI	TGCGCA	1 cut(s)	78
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	4 cut(s)	62, 75, 287, 489
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	43, 473
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	5 cut(s)	171, 538, 626, 649, 664
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	3 cut(s)	101, 281, 359
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	582
Hpy188III	TCNNGA	4 cut(s)	115, 134, 461, 661
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	2 cut(s)	20, 339
HpyCH4V	TGCA	3 cut(s)	56, 152, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 375
HpyF3I	CTNAG	2 cut(s)	185, 492
Hsp92II	CATG	5 cut(s)	171, 538, 626, 649, 664
HspAI	GCGC	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	39
KroNI	GCCGGC	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	226, 655, 712
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	9 cut(s)	53, 95, 125, 147, 192, 252, 301, 469, 474
Lsp1109I	GCAGC	4 cut(s)	48, 61, 298, 500
LweI	GCATC	3 cut(s)	26, 139, 505
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	3 cut(s)	228, 657, 714
MboI	GATC	3 cut(s)	226, 655, 712
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	2 cut(s)	226, 655
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	1 cut(s)	692
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	6 cut(s)	35, 80, 182, 472, 590, 645
MroNI	GCCGGC	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	2 cut(s)	333, 611
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	74, 491
MspI	CCGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	36, 375
NaeI	GCCGGC	1 cut(s)	41
NdeII	GATC	3 cut(s)	226, 655, 712
NgoMIV	GCCGGC	1 cut(s)	39
NlaIII	CATG	5 cut(s)	171, 538, 626, 649, 664
NlaIV	GGNNCC	4 cut(s)	17, 260, 425, 630
NmuCI	GTSAC	1 cut(s)	400
NsbI	TGCGCA	1 cut(s)	78
PagI	TCATGA	1 cut(s)	660
PceI	AGGCCT	1 cut(s)	473
PdiI	GCCGGC	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	63, 76, 288, 490
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	567
PspN4I	GGNNCC	4 cut(s)	17, 260, 425, 630
PsuI	RGATCY	2 cut(s)	226, 655
PvuII	CAGCTG	2 cut(s)	74, 491
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	333, 611
SatI	GCNGC	4 cut(s)	62, 75, 287, 489
Sau3AI	GATC	3 cut(s)	226, 655, 712
SchI	GAGTC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	3 cut(s)	26, 139, 505
SfcI	CTRYAG	2 cut(s)	69, 96
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	692
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	4 cut(s)	28, 51, 427, 689
SspI	AATATT	1 cut(s)	704
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	20, 339
TaqI	TCGA	5 cut(s)	34, 85, 407, 432, 595
TasI	AATT	1 cut(s)	692
Tru1I	TTAA	2 cut(s)	333, 611
Tru9I	TTAA	2 cut(s)	333, 611
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	4 cut(s)	61, 74, 286, 488
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	317, 551, 611
TspGWI	ACGGA	2 cut(s)	28, 480
TspRI	CASTG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.