Prupe.8G108900_v2.0.a1

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
13906769 .. 13910030
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G108900.1

Sequence Viewer

Length: 888 bp
ATGCTTGGTCGGCGTCAAGTCACGGAAACAAAGGTGGGTCCCTATGTATGGCTTACATATCAAGAGGTTCATGATGCCGCCCTTCGAATGGGTTCAGCCATCAGGAGCCGCGGTGTCAATCCTGTAAGTCACGTGCCTATTGAGAATATATGCTTCACTGAAAGCTGTGGTGGATGTCTTACATCTATTGGCAATGTTTTTCCTATGATGGGAACTGTGGGTGTTCCCATGACAACTATTGAAACAAGGCTTGAGTCAGTGCCAGAAATGGGATATGATGCACTTTCCAGTGTGCCAGGTGGAGAGATTTGCCTGAGAGGAAAATCCTTGTTTTCTGGTTACCACAAGCGACAAGATCTGACAGAGGAAGTCCTTGTTGATGGGGTGTGGATTGCAGGTGACATTGGAGAATTGCAGCCTATTGGAGCAACGGAAATCATAGATAGGACAAAGAATATATTTAAACTGTCTCAAGGTGATTATGTTGCTGTGGAAAACATTGAAAGCAAATACCTGCGATGCCCTCTTATCACATCGATTTGGGTTTATGGGAACAGCTTTGAGTCGTTTCTTATTGCTGTGGTGGTCCCTGACAGAAAGGCGTTGGAGGATTGGGCAGCAGAGCATAATTTGACCGATGATTTCAAATCATTATGTCAAAACCTGAAGGCAAGAAAGTACATTTTGGATGAGCTCAATGGTGTTGGTCAGAAGCAGCAAGTATCTGTTAAAAGCAGTTCATTTGGAACCAAATCCCTTGACATGGAGAGGGATCTCATAACTCCAACATTCAAACTGAAGAGACCACAGCTACTTAAATATTACAAGGGCCGCATTGATAAACTGTACAGTGAAGCCAAGGAAGCAAGGAATGAAATTAAAGCATAG

Protein Analysis

296

Amino Acids

32.95

Weight (kDa)

6.47

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 386
Acc36I ACCTGC 2 cut(s) 386, 522
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 78, 109, 111, 832
AclWI GGATC 1 cut(s) 780
AcuI CTGAAG 2 cut(s) 686, 818
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 2 cut(s) 680, 848
AfiI CCNNNNNNNGG 5 cut(s) 48, 88, 209, 269, 763
AgsI TTSAA 4 cut(s) 242, 503, 646, 793
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 4 cut(s) 165, 558, 694, 811
AluI AGCT 4 cut(s) 165, 558, 694, 811
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 2 cut(s) 474, 796
AlwI GGATC 1 cut(s) 780
AoxI GGCC 1 cut(s) 829
ApeKI GCWGC 3 cut(s) 415, 617, 715
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 3 cut(s) 38, 586, 829
AsuHPI GGTGA 2 cut(s) 410, 488
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 2 cut(s) 38, 586
BanII GRGCYC 1 cut(s) 696
BbrPI CACGTG 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 3 cut(s) 427, 629, 727
BccI CCATC 3 cut(s) 107, 202, 374
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 474, 796
BfuAI ACCTGC 2 cut(s) 386, 522
BglII AGATCT 1 cut(s) 355
BisI GCNGC 6 cut(s) 78, 109, 416, 618, 716, 832
BlsI GCNGC 6 cut(s) 79, 110, 417, 619, 717, 833
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 2 cut(s) 38, 586
BmgT120I GGNCC 3 cut(s) 38, 586, 829
BmiI GGNNCC 5 cut(s) 39, 40, 107, 588, 748
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 3 cut(s) 64, 268, 509
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 272, 456
Bsa29I ATCGAT 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 2 cut(s) 109, 858
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 88, 209, 269, 763
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 536
BseDI CCNNGG 2 cut(s) 109, 858
BseGI GGATG 2 cut(s) 179, 694
BseLI CCNNNNNNNGG 5 cut(s) 48, 88, 209, 269, 763
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 288
BseXI GCAGC 3 cut(s) 427, 629, 727
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 831
BshVI ATCGAT 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 696
BslFI GGGAC 2 cut(s) 24, 572
BslI CCNNNNNNNGG 5 cut(s) 48, 88, 209, 269, 763
BsmAI GTCTC 2 cut(s) 474, 796
BsmFI GGGAC 2 cut(s) 24, 572
BsnI GGCC 1 cut(s) 831
Bso31I GGTCTC 1 cut(s) 796
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 696
Bsp1407I TGTACA 1 cut(s) 846
Bsp143I GATC 2 cut(s) 355, 772
BspACI CCGC 4 cut(s) 78, 109, 111, 832
BspANI GGCC 1 cut(s) 831
BspCNI CTCAG 1 cut(s) 306
BspDI ATCGAT 1 cut(s) 536
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 5 cut(s) 39, 40, 107, 588, 748
BspMI ACCTGC 2 cut(s) 386, 522
BspPI GGATC 1 cut(s) 780
BspT104I TTCGAA 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 846
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 109, 858
BssMI GATC 2 cut(s) 355, 772
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 858
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 4 cut(s) 217, 468, 846, 851
Bst6I CTCTTC 1 cut(s) 794
BstACI GRCGYC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 846
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 338
BstF5I GGATG 2 cut(s) 179, 694
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 2 cut(s) 358, 775
BstMAI GTCTC 2 cut(s) 474, 796
BstMBI GATC 2 cut(s) 355, 772
BstMWI GCNNNNNNNGC 2 cut(s) 10, 863
BstNI CCWGG 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 295
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 427, 629, 727
BstX2I RGATCY 2 cut(s) 355, 772
BstYI RGATCY 2 cut(s) 355, 772
Bsu15I ATCGAT 1 cut(s) 536
BsuRI GGCC 1 cut(s) 831
BsuTUI ATCGAT 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 532
BtsCI GGATG 2 cut(s) 179, 694
BtsIMutI CAGTG 4 cut(s) 156, 264, 295, 856
BveI ACCTGC 2 cut(s) 386, 522
CciI TCATGA 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 38, 586, 829
Cfr42I CCGCGG 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 536
CseI GACGC 1 cut(s) 2
Csp6I GTAC 2 cut(s) 679, 847
CviAII CATG 3 cut(s) 71, 229, 763
CviQI GTAC 2 cut(s) 679, 847
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 357, 774
DpnII GATC 2 cut(s) 355, 772
DraI TTTAAA 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 794
EarI CTCTTC 1 cut(s) 794
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 858
Eco24I GRGCYC 1 cut(s) 696
Eco31I GGTCTC 1 cut(s) 796
Eco47I GGWCC 2 cut(s) 38, 586
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 2 cut(s) 686, 818
Eco72I CACGTG 1 cut(s) 133
Eco91I GGTNACC 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 694
EcoO109I RGGNCCY 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 858
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 3 cut(s) 74, 232, 766
FaqI GGGAC 2 cut(s) 24, 572
FatI CATG 3 cut(s) 70, 228, 762
Fnu4HI GCNGC 6 cut(s) 78, 109, 416, 618, 716, 832
FokI GGATG 2 cut(s) 186, 701
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 6 cut(s) 78, 109, 416, 618, 716, 832
GluI GCNGC 6 cut(s) 78, 109, 416, 618, 716, 832
HaeIII GGCC 1 cut(s) 831
HgaI GACGC 1 cut(s) 2
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 3 cut(s) 74, 232, 766
HinfI GANTC 2 cut(s) 254, 563
HphI GGTGA 2 cut(s) 410, 488
Hpy188I TCNGA 2 cut(s) 360, 711
Hpy188III TCNNGA 3 cut(s) 62, 71, 103
HpyAV CCTTC 2 cut(s) 92, 661
HpyCH4III ACNGT 4 cut(s) 217, 468, 846, 851
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 281, 395, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 863
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 3 cut(s) 74, 232, 766
KflI GGGWCCC 1 cut(s) 38
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 2 cut(s) 355, 772
LmnI GCTCC 2 cut(s) 105, 425
Lsp1109I GCAGC 3 cut(s) 427, 629, 727
LweI GCATC 3 cut(s) 64, 268, 509
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 4 cut(s) 19, 128, 338, 398
MalI GATC 2 cut(s) 357, 774
MboI GATC 2 cut(s) 355, 772
MboII GAAGA 1 cut(s) 811
MflI RGATCY 2 cut(s) 355, 772
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 3 cut(s) 410, 628, 876
MlyI GAGTC 2 cut(s) 263, 572
MmeI TCCRAC 2 cut(s) 585, 809
MnlI CCTC 6 cut(s) 58, 311, 358, 534, 601, 762
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 4 cut(s) 462, 729, 816, 879
MspA1I CMGCKG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 10, 863
NdeII GATC 2 cut(s) 355, 772
NlaIII CATG 3 cut(s) 74, 232, 766
NlaIV GGNNCC 5 cut(s) 39, 40, 107, 588, 748
NmuCI GTSAC 3 cut(s) 19, 128, 398
NspV TTCGAA 1 cut(s) 85
PagI TCATGA 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 91
PkrI GCNGC 6 cut(s) 79, 110, 417, 619, 717, 833
PleI GAGTC 2 cut(s) 262, 571
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 2 cut(s) 262, 571
Ppu21I YACGTR 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 295
PspCI CACGTG 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 5 cut(s) 39, 40, 107, 588, 748
PspPI GGNCC 3 cut(s) 38, 586, 829
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 2 cut(s) 355, 772
RsaI GTAC 2 cut(s) 680, 848
RsaNI GTAC 2 cut(s) 679, 847
SacI GAGCTC 1 cut(s) 696
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 4 cut(s) 462, 729, 816, 879
SatI GCNGC 6 cut(s) 78, 109, 416, 618, 716, 832
Sau3AI GATC 2 cut(s) 355, 772
Sau96I GGNCC 3 cut(s) 38, 586, 829
SchI GAGTC 2 cut(s) 263, 572
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 3 cut(s) 64, 268, 509
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 2 cut(s) 38, 586
SmlI CTYRAG 2 cut(s) 251, 471
SmoI CTYRAG 2 cut(s) 251, 471
Sse9I AATT 3 cut(s) 410, 628, 876
SsiI CCGC 4 cut(s) 78, 109, 111, 832
SspI AATATT 1 cut(s) 821
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 4 cut(s) 217, 468, 846, 851
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 85, 536
TaqII GACCGA 1 cut(s) 650
TasI AATT 3 cut(s) 410, 628, 876
TatI WGTACW 2 cut(s) 678, 846
TauI GCSGC 3 cut(s) 80, 111, 834
Tru1I TTAA 4 cut(s) 462, 729, 816, 879
Tru9I TTAA 4 cut(s) 462, 729, 816, 879
TscAI CASTG 4 cut(s) 163, 264, 295, 856
TseFI GTSAC 3 cut(s) 19, 128, 398
TseI GCWGC 3 cut(s) 415, 617, 715
Tsp45I GTSAC 3 cut(s) 19, 128, 398
TspDTI ATGAA 3 cut(s) 59, 729, 888
TspGWI ACGGA 2 cut(s) 38, 446
TspRI CASTG 4 cut(s) 163, 264, 295, 856
VpaK11BI GGWCC 2 cut(s) 38, 586
XmnI GAANNNNTTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.