Rroxscaffold_2G00103450

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000225
Physical Location & Seq
Reverse (-)
26084137 .. 26088124
3988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103450.1

Sequence Viewer

Length: 252 bp
ATGGGCCCTTCGTTCCTACATACTTCAAGACTACCACTATTTATAACCCGAGATGCTTTGAAGGGAGGACAAAATAACGTTACAATCTCCAGGACTGAGGACTCTTCCCTTCCGCCCATTCTCAATGCCTTTGAGATTTATATTCTAAAAGAATTCTCTGAGTCGGAAACAATGATCGTCATCCCGTACCGGGATACAAGTACAGTAAACACTCCCATAAAGCATTTCGCTACTCAATTAACATCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

83

Amino Acids

9.36

Weight (kDa)

6.72

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AciI CCGC 1 cut(s) 113
AclI AACGTT 1 cut(s) 78
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 2 cut(s) 188, 202
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 27, 61
AjnI CCWGG 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 4, 5
AsuC2I CCSGG 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 48
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 91
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 91, 191
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 91, 191
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 87, 150
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 1 cut(s) 6
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 88, 151
BspLI GGNNCC 1 cut(s) 6
BssMI GATC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 205, 249
Bst6I CTCTTC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 96, 159
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 89, 189
BstSLI GKGCMC 1 cut(s) 8
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 4, 5
Csp6I GTAC 2 cut(s) 187, 201
CviJI RGCY 1 cut(s) 6
CviKI_1 RGCY 1 cut(s) 6
CviQI GTAC 2 cut(s) 187, 201
DdeI CTNAG 2 cut(s) 96, 159
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 8
FaiI YATR 4 cut(s) 21, 44, 141, 218
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 1 cut(s) 6
HapII CCGG 1 cut(s) 190
HinfI GANTC 2 cut(s) 101, 161
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 160, 166
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 18, 55, 119
HpyCH4III ACNGT 2 cut(s) 205, 249
HpyCH4IV ACGT 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 96, 159
HpySE526I ACGT 1 cut(s) 78
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 3 cut(s) 76, 103, 203
LweI GCATC 1 cut(s) 43
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 152, 236
MlyI GAGTC 2 cut(s) 95, 170
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 2 cut(s) 59, 91
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 247
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 91, 191
MvaI CCWGG 1 cut(s) 91
NciI CCSGG 1 cut(s) 191
NdeII GATC 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 6
PfoI TCCNGGA 1 cut(s) 89
PleI GAGTC 2 cut(s) 95, 169
PpsI GAGTC 2 cut(s) 95, 169
PsiI TTATAA 1 cut(s) 44
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 6
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
RsaI GTAC 2 cut(s) 188, 202
RsaNI GTAC 2 cut(s) 187, 201
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 4, 5
SchI GAGTC 2 cut(s) 95, 170
ScrFI CCNGG 2 cut(s) 91, 191
SduI GDGCHC 1 cut(s) 8
SetI ASST 1 cut(s) 81
SfaNI GCATC 1 cut(s) 43
SgeI CNNG 9 cut(s) 39, 60, 62, 102, 103, 196, 202, 203, 210
SmiMI CAYNNNNRTG 1 cut(s) 247
Sse9I AATT 2 cut(s) 152, 236
SsiI CCGC 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 89, 189
TaaI ACNGT 2 cut(s) 205, 249
TaiI ACGT 1 cut(s) 81
TasI AATT 2 cut(s) 152, 236
TatI WGTACW 1 cut(s) 200
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.