Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

57605462 .. 57607148

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCTGAAGTGTCTTCCAAAAGACGAAGCACAAGCTTGACTATTAAAAAGATGTGCCTTACTGAAAGCTGTGGTGGGTGTTTTACGTCCGTTGGCAATGTTTATCCTATGATTGGAACTATTGGTGTCCCCCTGACAAGTATTGAACCAAGGCTTGTGTCAGTCCCAGGACTGGGATATGATGCACTTTCTAGTGTGCCACATGGAGAGATCGGCCTAAGAGGAAAGACCTTGTTTGAAATATGGGTTTATCAGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTAGCATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

111

Amino Acids

12.0

Weight (kDa)

6.55

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	113, 172, 173
AgsI	TTSAA	2 cut(s)	146, 239
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	36, 69, 261, 323
AluI	AGCT	4 cut(s)	36, 69, 261, 323
AoxI	GGCC	2 cut(s)	214, 303
ApeKI	GCWGC	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	260
AsuNHI	GCTAGC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	168
BfaI	CTAG	2 cut(s)	192, 324
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	2 cut(s)	182, 325
BmsI	GCATC	1 cut(s)	172
BmtI	GCTAGC	1 cut(s)	327
BmuI	ACTGGG	2 cut(s)	182, 325
BpiI	GAAGAC	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	149, 166, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 172, 173
Bse1I	ACTGG	2 cut(s)	177, 320
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	3 cut(s)	149, 166, 306
BseLI	CCNNNNNNNGG	3 cut(s)	113, 172, 173
BseMI	GCAATG	1 cut(s)	103
BseNI	ACTGG	2 cut(s)	177, 320
BseXI	GCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	216, 305
BslFI	GGGAC	2 cut(s)	113, 149
BslI	CCNNNNNNNGG	3 cut(s)	113, 172, 173
BsmFI	GGGAC	2 cut(s)	113, 149
BsnI	GGCC	2 cut(s)	216, 305
Bsp143I	GATC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	216, 305
BspOI	GCTAGC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	177, 320
BssECI	CCNNGG	3 cut(s)	149, 166, 306
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	149, 306
Bst2UI	CCWGG	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	218
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	216, 305
Cac8I	GCNNGC	1 cut(s)	325
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	7 cut(s)	36, 69, 154, 216, 261, 305, 323
CviKI_1	RGCY	7 cut(s)	36, 69, 154, 216, 261, 305, 323
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	149, 306
Eco147I	AGGCCT	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	149, 306
ErhI	CCWWGG	2 cut(s)	149, 306
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	110, 180, 204, 244
FaqI	GGGAC	2 cut(s)	113, 149
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	192, 324
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	216, 305
Hin1II	CATG	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	7, 255
Hpy188III	TCNNGA	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	6 cut(s)	146, 153, 158, 180, 301, 306
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	192, 324
MaeII	ACGT	1 cut(s)	86
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	2 cut(s)	215, 304
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	210
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	6 cut(s)	38, 71, 89, 233, 263, 325
SfaNI	GCATC	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	192, 324
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	2 cut(s)	149, 306
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	192, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.