Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16629151 .. 16632326

Gene Structure 3176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTGGAGGAATTTATCAGAAGGATATGGCCTTACTGAAAGCTATGGTGGGTGTTTTACGTCCCTTGGCAATGTTTATCCTATGATTGGAACTGTTGGTGTCCCCCTGACAACTATTGAAGTGTGGCTTGAGTCGGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCATGTGGAGAGATTTTCCTAGGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCGACAAGATCTAACTGAAGAAGTCCTTATTGATGGGTGGTTCCGTACAGGTGATATAGGTGGATGGCAGCCTAATGGAGCAATGAAAGTTGCAGACAGGAAAATGGAAGTATTTAAACTGTCTCAAGGTGAATATGTTGCTATGGAAAGCATTGAAAGCAAATACTTGCAATGGCCCCTTATCACATCAATATGGGTTTATGGGAACGGCTTTGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGGCAGAAAGGCCTTGCTGAGCATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

165

Amino Acids

18.26

Weight (kDa)

4.77

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	4 - 74	7.5e-07	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	3 cut(s)	86, 145, 146
AgsI	TTSAA	2 cut(s)	119, 380
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	351
AoxI	GGCC	3 cut(s)	28, 398, 477
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	10
AspA2I	CCTAGG	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	136, 399
AsuHPI	GGTGA	2 cut(s)	287, 365
AvaII	GGWCC	1 cut(s)	136
AvrII	CCTAGG	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	2 cut(s)	251, 282
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	2 cut(s)	165, 191
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	293
BlnI	CCTAGG	1 cut(s)	190
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 399
BmiI	GGNNCC	3 cut(s)	138, 266, 401
BmrFI	CCNGG	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	2 cut(s)	149, 333
BsaJI	CCNNGG	2 cut(s)	64, 190
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 145, 146
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	3 cut(s)	76, 312, 401
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	64, 190
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	3 cut(s)	86, 145, 146
BseMI	GCAATG	3 cut(s)	76, 312, 401
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	3 cut(s)	30, 400, 479
BslFI	GGGAC	3 cut(s)	46, 86, 122
BslI	CCNNNNNNNGG	3 cut(s)	86, 145, 146
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	3 cut(s)	46, 86, 122
BsnI	GGCC	3 cut(s)	30, 400, 479
Bsp143I	GATC	1 cut(s)	232
Bsp1720I	GCTNAGC	1 cut(s)	485
BspANI	GGCC	3 cut(s)	30, 400, 479
BspCNI	CTCAG	1 cut(s)	477
BspLI	GGNNCC	3 cut(s)	138, 266, 401
BsrDI	GCAATG	3 cut(s)	76, 312, 401
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	64, 190
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	64, 190
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	94, 345
BstDEI	CTNAG	1 cut(s)	485
BstEII	GGTNACC	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	1 cut(s)	468
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	30, 400, 479
BtsCI	GGATG	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	136, 399
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	7 cut(s)	30, 42, 127, 295, 400, 435, 479
CviKI_1	RGCY	7 cut(s)	30, 42, 127, 295, 400, 435, 479
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraI	TTTAAA	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	64, 190
Eco147I	AGGCCT	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	215
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	2 cut(s)	64, 190
ErhI	CCWWGG	2 cut(s)	64, 190
FaeI	CATG	1 cut(s)	177
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 234, 266
FaqI	GGGAC	3 cut(s)	46, 86, 122
FatI	CATG	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	165, 191
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	3 cut(s)	30, 400, 479
Hin1II	CATG	1 cut(s)	177
HinfI	GANTC	2 cut(s)	131, 440
HphI	GGTGA	2 cut(s)	287, 365
Hpy188I	TCNGA	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	94, 345
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	158, 317, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	8 cut(s)	119, 131, 153, 198, 258, 307, 453, 480
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	165, 191
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	2 cut(s)	140, 449
MnlI	CCTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	3 cut(s)	138, 266, 401
PceI	AGGCCT	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	2 cut(s)	139, 448
PpsI	GAGTC	2 cut(s)	139, 448
Psp6I	CCWGG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	3 cut(s)	138, 266, 401
PspPI	GGNCC	2 cut(s)	136, 399
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	415
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	2 cut(s)	136, 399
SchI	GAGTC	2 cut(s)	140, 449
ScrFI	CCNGG	1 cut(s)	468
SetI	ASST	6 cut(s)	44, 62, 206, 277, 286, 355
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	128, 348
SmoI	CTYRAG	2 cut(s)	128, 348
Sse9I	AATT	1 cut(s)	10
SseBI	AGGCCT	1 cut(s)	479
SspMI	CTAG	2 cut(s)	165, 191
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	2 cut(s)	64, 190
TaaI	ACNGT	2 cut(s)	94, 345
TaiI	ACGT	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	10
XmaJI	CCTAGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	165, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.