Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

17135469 .. 17223280

Gene Structure 87812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG114200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGGATCAGTTTGCGGTGAAGGTGGAGGAGGCGAGGCCGGCCGCTGATGGGAGGCCGTCGGCGGGGCCGGTGTATCGGAGCATTTATGCTAAAGATGGGCTGTTGGAGTTGCCGGAGGGGTTCGAGTCACCGTGGCAGTTTCTCAGTGACTCGGTTAAGAGGAACCCAAGCGGTCGAATGCTTGGTCAACGCCAAGTCAACGAGAAGAAGGCGGGTCCATATGTGTGGAGTACATATCAAGAGGTCTATGATGCAGCCATTCGTACGGGTTCGGCCATCAGAAGCCGTGGTGTCAATCCTGCCTGTAACTGCCATGCGATTACATATGTTCCACTTTACGACACCCTTGGTGCTAATGCAGTTGAGTTCATCATCAACCATGCTGAAGTTTCAATAGCTTTTGTTCAAGAGAACAAGATCCCTGCTCTTATATTATGCCTTCCGAACTGTTCTACGCATTTAAAAACAATTGTCAGCTTCACGAATGTTTCTAGCACTCAAAAGAAGGAAGCAGAAGAACTGGGGGTATCTTGCTTTTCGTGGCAGGAATTCTCTCAGTTGGGAAATTCAGATCATGAACTACCTCAAAAACAGAGGACTGCTGTTTGCACAATAATGTATACAAGTGGAACGACTGGAGAACCAAAAGGCGTAATCATTACTAATGCAGCATTAATGTTGGAAGTATTGTCAACAGACCATATACTTTTCCTAACAGATAGAGTGTGTACAGAAGAAGATTCATATTTTTCGTTTCTCCCGTTGGCCCATATATATGACCAAATAATCGAGAGCTATTGCATCTACAAGGGATCTTCAATAGGCTTCTGGCGAGGTGATGTCAGGTTTTTACTGGACGACCTTCAGGAACTAAAGCCTACTACGTTTTGTGGGGTTCCTCGAGTTTATGACCGTATATACACTGGTATTGCTAGTAAAGTTTCATCTGGTGGTGTGCTGAGGAAGACCCTTTTCCAGTATGCATATAACTACAAGTTGGCAAATCTGGAGAATGGTTTACCACAAGAAAAAGCGGCACCTCTCTTGGACAAGCTTGTATTTAACAAGATAAAACAAGCATTAGGAGGACGAGTTCGTATAATGTTGTCTGGTGCTGCACCTTTGCCCAGGCATGTGGAGGAATTTTTGAGGGTCACCAGCTGCAGCACTTTATCCCAAGGATATGGCCTTACTGAAAGCTGTGGTGGCTGTTTTTCATCCATTGGCAATGTTTATCCTATGGTTGGGACTGTGGGTGTACCCTTGACAACTATTGAAGCACGGCTTGAGTCGGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCGAGCAGATCTCACTGAAGAAGTCCTTATTGATGGGTGGTTCCATACGGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAAAACTTGCAATGCCCCCTTATCACATCAATATGGGTTTATGGGAACACCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAAAAAGGCCTTGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

549

Amino Acids

60.73

Weight (kDa)

5.84

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	101 - 460	3e-59	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1036
AccI	GTMKAC	1 cut(s)	620
AciI	CCGC	6 cut(s)	14, 42, 62, 171, 212, 1034
AclWI	GGATC	3 cut(s)	12, 412, 820
AcoI	YGGCCR	2 cut(s)	39, 273
AcsI	RAATTY	3 cut(s)	548, 565, 1142
AcuI	CTGAAG	3 cut(s)	405, 848, 1419
AcvI	CACGTG	1 cut(s)	1334
AfaI	GTAC	4 cut(s)	232, 265, 730, 1260
AfiI	CCNNNNNNNGG	5 cut(s)	48, 62, 1244, 1303, 1304
AgsI	TTSAA	5 cut(s)	393, 407, 819, 1277, 1538
AjnI	CCWGG	1 cut(s)	1127
AloI	GAACNNNNNNTCC	2 cut(s)	1077, 1109
AluBI	AGCT	6 cut(s)	398, 477, 795, 1054, 1161, 1200
AluI	AGCT	6 cut(s)	398, 477, 795, 1054, 1161, 1200
Alw26I	GTCTC	1 cut(s)	1509
AlwI	GGATC	3 cut(s)	12, 412, 820
Ama87I	CYCGRG	1 cut(s)	900
AoxI	GGCC	8 cut(s)	35, 39, 53, 65, 273, 765, 1186, 1635
ApeKI	GCWGC	6 cut(s)	254, 668, 1115, 1161, 1164, 1450
ApoI	RAATTY	3 cut(s)	548, 565, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AseI	ATTAAT	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	1592
AspS9I	GGNCC	4 cut(s)	65, 215, 766, 1294
AsuHPI	GGTGA	6 cut(s)	28, 120, 848, 1147, 1445, 1523
AvaI	CYCGRG	1 cut(s)	900
AvaII	GGWCC	2 cut(s)	215, 1294
BanI	GGYRCC	1 cut(s)	1036
BbrPI	CACGTG	1 cut(s)	1334
BbsI	GAAGAC	1 cut(s)	971
BbvCI	CCTCAGC	1 cut(s)	959
BbvI	GCAGC	6 cut(s)	266, 680, 1102, 1148, 1176, 1462
BccI	CCATC	4 cut(s)	41, 89, 284, 1409
BceAI	ACGGC	3 cut(s)	40, 270, 1298
BciT130I	CCWGG	1 cut(s)	1129
BcoDI	GTCTC	1 cut(s)	1509
BfaI	CTAG	3 cut(s)	492, 933, 1323
BfmI	CTRYAG	1 cut(s)	1162
BglII	AGATCT	1 cut(s)	1390
BisI	GCNGC	8 cut(s)	42, 255, 669, 1035, 1116, 1162, 1165, 1451
BlsI	GCNGC	8 cut(s)	43, 256, 670, 1036, 1117, 1163, 1166, 1452
Bme1390I	CCNGG	1 cut(s)	1129
Bme18I	GGWCC	2 cut(s)	215, 1294
BmeT110I	CYCGRG	1 cut(s)	900
BmgT120I	GGNCC	4 cut(s)	65, 215, 766, 1294
BmiI	GGNNCC	7 cut(s)	66, 164, 216, 897, 1038, 1296, 1424
BmrFI	CCNGG	1 cut(s)	1129
BmrI	ACTGGG	2 cut(s)	530, 1313
BmsI	GCATC	3 cut(s)	241, 810, 1303
BmuI	ACTGGG	2 cut(s)	530, 1313
BpiI	GAAGAC	1 cut(s)	971
BplI	GAGNNNNNCTC	2 cut(s)	1377, 1409
BpmI	CTGGAG	2 cut(s)	657, 1028
Bpu10I	CCTNAGC	1 cut(s)	959
BpuEI	CTTGAG	2 cut(s)	1307, 1491
BsaAI	YACGTR	1 cut(s)	1334
BsaJI	CCNNGG	6 cut(s)	131, 286, 346, 1127, 1177, 1638
BsaXI	ACNNNNNCTCC	2 cut(s)	1077, 1107
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 62, 1244, 1303, 1304
Bse118I	RCCGGY	2 cut(s)	37, 67
Bse1I	ACTGG	6 cut(s)	525, 640, 858, 928, 976, 1308
Bse3DI	GCAATG	3 cut(s)	1234, 1470, 1559
BseBI	CCWGG	1 cut(s)	1129
BseDI	CCNNGG	6 cut(s)	131, 286, 346, 1127, 1177, 1638
BseGI	GGATG	1 cut(s)	1217
BseLI	CCNNNNNNNGG	5 cut(s)	48, 62, 1244, 1303, 1304
BseMI	GCAATG	3 cut(s)	1234, 1470, 1559
BseMII	CTCAG	3 cut(s)	157, 569, 950
BseNI	ACTGG	6 cut(s)	525, 640, 858, 928, 976, 1308
BseRI	GAGGAG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	6 cut(s)	266, 680, 1102, 1148, 1176, 1462
BsgI	GTGCAG	1 cut(s)	1101
Bsh1285I	CGRYCG	2 cut(s)	42, 175
BshFI	GGCC	8 cut(s)	37, 41, 55, 67, 275, 767, 1188, 1637
BshNI	GGYRCC	1 cut(s)	1036
BsiEI	CGRYCG	2 cut(s)	42, 175
BsiHKCI	CYCGRG	1 cut(s)	900
BsiSI	CCGG	3 cut(s)	38, 68, 113
BsiWI	CGTACG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	1261, 1280
BslI	CCNNNNNNNGG	5 cut(s)	48, 62, 1244, 1303, 1304
BsmAI	GTCTC	1 cut(s)	1509
BsmFI	GGGAC	2 cut(s)	1261, 1280
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	8 cut(s)	37, 41, 55, 67, 275, 767, 1188, 1637
BsoBI	CYCGRG	1 cut(s)	900
Bsp1407I	TGTACA	1 cut(s)	728
Bsp143I	GATC	5 cut(s)	4, 417, 571, 812, 1390
BspACI	CCGC	6 cut(s)	14, 42, 62, 171, 212, 1034
BspANI	GGCC	8 cut(s)	37, 41, 55, 67, 275, 767, 1188, 1637
BspCNI	CTCAG	3 cut(s)	156, 568, 951
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	7 cut(s)	66, 164, 216, 897, 1038, 1296, 1424
BspMAI	CTGCAG	1 cut(s)	1166
BspPI	GGATC	3 cut(s)	12, 412, 820
BspT107I	GGYRCC	1 cut(s)	1036
BsrDI	GCAATG	3 cut(s)	1234, 1470, 1559
BsrFI	RCCGGY	2 cut(s)	37, 67
BsrGI	TGTACA	1 cut(s)	728
BsrI	ACTGG	6 cut(s)	525, 640, 858, 928, 976, 1308
BssAI	RCCGGY	2 cut(s)	37, 67
BssECI	CCNNGG	6 cut(s)	131, 286, 346, 1127, 1177, 1638
BssMI	GATC	5 cut(s)	4, 417, 571, 812, 1390
BssNAI	GTATAC	1 cut(s)	621
BssT1I	CCWWGG	3 cut(s)	346, 1177, 1638
Bst1107I	GTATAC	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	1129
Bst4CI	ACNGT	5 cut(s)	132, 449, 914, 1252, 1503
BstAUI	TGTACA	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	1334
BstC8I	GCNNGC	2 cut(s)	39, 1386
BstDEI	CTNAG	4 cut(s)	143, 555, 959, 1349
BstDSI	CCRYGG	2 cut(s)	131, 286
BstEII	GGTNACC	2 cut(s)	1153, 1373
BstF5I	GGATG	1 cut(s)	1217
BstKTI	GATC	5 cut(s)	7, 420, 574, 815, 1393
BstMAI	GTCTC	1 cut(s)	1509
BstMBI	GATC	5 cut(s)	4, 417, 571, 812, 1390
BstMCI	CGRYCG	2 cut(s)	42, 175
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 1206, 1539
BstNI	CCWGG	1 cut(s)	1129
BstNSI	RCATGY	1 cut(s)	1136
BstPI	GGTNACC	2 cut(s)	1153, 1373
BstSCI	CCNGG	1 cut(s)	1127
BstSFI	CTRYAG	1 cut(s)	1162
BstV1I	GCAGC	6 cut(s)	266, 680, 1102, 1148, 1176, 1462
BstV2I	GAAGAC	1 cut(s)	971
BstX2I	RGATCY	3 cut(s)	417, 812, 1390
BstXI	CCANNNNNNTGG	3 cut(s)	225, 1135, 1184
BstYI	RGATCY	3 cut(s)	417, 812, 1390
BstZ17I	GTATAC	1 cut(s)	621
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	8 cut(s)	37, 41, 55, 67, 275, 767, 1188, 1637
BtgI	CCRYGG	2 cut(s)	131, 286
BtsCI	GGATG	1 cut(s)	1217
BtsIMutI	CAGTG	3 cut(s)	151, 921, 1395
Cac8I	GCNNGC	2 cut(s)	39, 1386
CciI	TCATGA	1 cut(s)	574
Cfr10I	RCCGGY	2 cut(s)	37, 67
Cfr13I	GGNCC	4 cut(s)	65, 215, 766, 1294
Csp6I	GTAC	4 cut(s)	231, 264, 729, 1259
CviAII	CATG	4 cut(s)	314, 380, 575, 1133
CviQI	GTAC	4 cut(s)	231, 264, 729, 1259
DdeI	CTNAG	4 cut(s)	143, 555, 959, 1349
DpnI	GATC	5 cut(s)	6, 419, 573, 814, 1392
DpnII	GATC	5 cut(s)	4, 417, 571, 812, 1390
DraI	TTTAAA	2 cut(s)	462, 1498
EaeI	YGGCCR	2 cut(s)	39, 273
EagI	CGGCCG	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	346, 1177, 1638
Eco147I	AGGCCT	1 cut(s)	1637
Eco47I	GGWCC	2 cut(s)	215, 1294
Eco52I	CGGCCG	1 cut(s)	39
Eco57I	CTGAAG	3 cut(s)	405, 848, 1419
Eco72I	CACGTG	1 cut(s)	1334
Eco88I	CYCGRG	1 cut(s)	900
Eco91I	GGTNACC	2 cut(s)	1153, 1373
EcoO65I	GGTNACC	2 cut(s)	1153, 1373
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	1127
EcoT14I	CCWWGG	3 cut(s)	346, 1177, 1638
EcoT22I	ATGCAT	1 cut(s)	985
ErhI	CCWWGG	3 cut(s)	346, 1177, 1638
FaeI	CATG	4 cut(s)	317, 383, 578, 1136
FalI	AAGNNNNNCTT	4 cut(s)	1269, 1301, 1392, 1424
FaqI	GGGAC	2 cut(s)	1261, 1280
FatI	CATG	4 cut(s)	313, 379, 574, 1132
FauI	CCCGC	2 cut(s)	55, 205
FauNDI	CATATG	2 cut(s)	220, 325
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	8 cut(s)	42, 255, 669, 1035, 1116, 1162, 1165, 1451
FokI	GGATG	1 cut(s)	1204
FseI	GGCCGGCC	1 cut(s)	41
Fsp4HI	GCNGC	8 cut(s)	42, 255, 669, 1035, 1116, 1162, 1165, 1451
FspBI	CTAG	3 cut(s)	492, 933, 1323
GluI	GCNGC	8 cut(s)	42, 255, 669, 1035, 1116, 1162, 1165, 1451
GsuI	CTGGAG	2 cut(s)	657, 1028
HaeIII	GGCC	8 cut(s)	37, 41, 55, 67, 275, 767, 1188, 1637
HapII	CCGG	3 cut(s)	38, 68, 113
Hin1II	CATG	4 cut(s)	317, 383, 578, 1136
HincII	GTYRAC	3 cut(s)	188, 199, 693
HindII	GTYRAC	3 cut(s)	188, 199, 693
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	5 cut(s)	125, 149, 740, 1289, 1598
HpaII	CCGG	3 cut(s)	38, 68, 113
HphI	GGTGA	6 cut(s)	28, 120, 848, 1147, 1445, 1523
Hpy166II	GTNNAC	7 cut(s)	188, 199, 621, 693, 729, 1019, 1259
Hpy188I	TCNGA	4 cut(s)	78, 281, 444, 571
Hpy188III	TCNNGA	8 cut(s)	239, 407, 481, 575, 790, 866, 1007, 1625
Hpy8I	GTNNAC	7 cut(s)	188, 199, 621, 693, 729, 1019, 1259
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	6 cut(s)	13, 202, 449, 499, 872, 1603
HpyCH4III	ACNGT	5 cut(s)	132, 449, 914, 1252, 1503
HpyCH4IV	ACGT	2 cut(s)	884, 1333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 1206, 1539
HpyF3I	CTNAG	4 cut(s)	143, 555, 959, 1349
HpySE526I	ACGT	2 cut(s)	884, 1333
Hsp92II	CATG	4 cut(s)	317, 383, 578, 1136
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	4, 417, 571, 812, 1390
LmnI	GCTCC	2 cut(s)	78, 1460
Lsp1109I	GCAGC	6 cut(s)	266, 680, 1102, 1148, 1176, 1462
LweI	GCATC	3 cut(s)	241, 810, 1303
MaeI	CTAG	3 cut(s)	492, 933, 1323
MaeII	ACGT	2 cut(s)	884, 1333
MaeIII	GTNAC	5 cut(s)	126, 146, 305, 1153, 1373
MalI	GATC	5 cut(s)	6, 419, 573, 814, 1392
MboI	GATC	5 cut(s)	4, 417, 571, 812, 1390
MboII	GAAGA	7 cut(s)	217, 527, 746, 749, 807, 976, 1412
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	3 cut(s)	417, 812, 1390
MluCI	AATT	4 cut(s)	468, 548, 565, 1142
MlyI	GAGTC	4 cut(s)	134, 143, 1298, 1607
MmeI	TCCRAC	2 cut(s)	84, 660
Mph1103I	ATGCAT	1 cut(s)	985
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	1592
MseI	TTAA	5 cut(s)	156, 461, 674, 1062, 1497
MslI	CAYNNNNRTG	5 cut(s)	223, 614, 774, 1431, 1573
MspA1I	CMGCKG	2 cut(s)	44, 1161
MspI	CCGG	3 cut(s)	38, 68, 113
MspR9I	CCNGG	1 cut(s)	1129
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	1129
MwoI	GCNNNNNNNGC	3 cut(s)	38, 1206, 1539
NaeI	GCCGGC	1 cut(s)	39
NdeI	CATATG	2 cut(s)	220, 325
NdeII	GATC	5 cut(s)	4, 417, 571, 812, 1390
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	4 cut(s)	317, 383, 578, 1136
NlaIV	GGNNCC	7 cut(s)	66, 164, 216, 897, 1038, 1296, 1424
NmuCI	GTSAC	3 cut(s)	126, 146, 1153
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	1 cut(s)	1136
PaeR7I	CTCGAG	1 cut(s)	900
PagI	TCATGA	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	1637
PcsI	WCGNNNNNNNCGW	1 cut(s)	758
PctI	GAATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	1592
PfeI	GAWTC	1 cut(s)	740
Pfl23II	CGTACG	1 cut(s)	263
PkrI	GCNGC	8 cut(s)	43, 256, 670, 1036, 1117, 1163, 1166, 1452
PleI	GAGTC	4 cut(s)	133, 143, 1297, 1606
PmaCI	CACGTG	1 cut(s)	1334
PmlI	CACGTG	1 cut(s)	1334
PpsI	GAGTC	4 cut(s)	133, 143, 1297, 1606
Ppu21I	YACGTR	1 cut(s)	1334
PshBI	ATTAAT	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	1127
PspCI	CACGTG	1 cut(s)	1334
PspEI	GGTNACC	2 cut(s)	1153, 1373
PspGI	CCWGG	1 cut(s)	1127
PspLI	CGTACG	1 cut(s)	263
PspN4I	GGNNCC	7 cut(s)	66, 164, 216, 897, 1038, 1296, 1424
PspPI	GGNCC	4 cut(s)	65, 215, 766, 1294
PspXI	VCTCGAGB	1 cut(s)	900
PstI	CTGCAG	1 cut(s)	1166
PsuI	RGATCY	3 cut(s)	417, 812, 1390
PvuII	CAGCTG	1 cut(s)	1161
RigI	GGCCGGCC	1 cut(s)	41
RsaI	GTAC	4 cut(s)	232, 265, 730, 1260
RsaNI	GTAC	4 cut(s)	231, 264, 729, 1259
RseI	CAYNNNNRTG	5 cut(s)	223, 614, 774, 1431, 1573
SaqAI	TTAA	5 cut(s)	156, 461, 674, 1062, 1497
SatI	GCNGC	8 cut(s)	42, 255, 669, 1035, 1116, 1162, 1165, 1451
Sau3AI	GATC	5 cut(s)	4, 417, 571, 812, 1390
Sau96I	GGNCC	4 cut(s)	65, 215, 766, 1294
SchI	GAGTC	4 cut(s)	134, 143, 1298, 1607
ScrFI	CCNGG	1 cut(s)	1129
SfaNI	GCATC	3 cut(s)	241, 810, 1303
SfcI	CTRYAG	1 cut(s)	1162
Sfr274I	CTCGAG	1 cut(s)	900
SinI	GGWCC	2 cut(s)	215, 1294
SlaI	CTCGAG	1 cut(s)	900
SmiMI	CAYNNNNRTG	5 cut(s)	223, 614, 774, 1431, 1573
SmlI	CTYRAG	3 cut(s)	900, 1286, 1506
SmoI	CTYRAG	3 cut(s)	900, 1286, 1506
Sse9I	AATT	4 cut(s)	468, 548, 565, 1142
SseBI	AGGCCT	1 cut(s)	1637
SsiI	CCGC	6 cut(s)	14, 42, 62, 171, 212, 1034
SspMI	CTAG	3 cut(s)	492, 933, 1323
StuI	AGGCCT	1 cut(s)	1637
StyD4I	CCNGG	1 cut(s)	1127
StyI	CCWWGG	3 cut(s)	346, 1177, 1638
TaaI	ACNGT	5 cut(s)	132, 449, 914, 1252, 1503
TaiI	ACGT	2 cut(s)	887, 1336
TaqI	TCGA	5 cut(s)	123, 175, 789, 901, 1596
TaqII	GACCGA	1 cut(s)	1282
TasI	AATT	4 cut(s)	468, 548, 565, 1142
TatI	WGTACW	2 cut(s)	230, 728
TauI	GCSGC	2 cut(s)	44, 1037
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	5 cut(s)	156, 461, 674, 1062, 1497
Tru9I	TTAA	5 cut(s)	156, 461, 674, 1062, 1497
TscAI	CASTG	3 cut(s)	151, 928, 1402
TseFI	GTSAC	3 cut(s)	126, 146, 1153
TseI	GCWGC	6 cut(s)	254, 668, 1115, 1161, 1164, 1450
Tsp45I	GTSAC	3 cut(s)	126, 146, 1153
TspDTI	ATGAA	6 cut(s)	358, 591, 732, 933, 1206, 1481
TspRI	CASTG	3 cut(s)	151, 928, 1402
VpaK11BI	GGWCC	2 cut(s)	215, 1294
VspI	ATTAAT	1 cut(s)	674
XapI	RAATTY	3 cut(s)	548, 565, 1142
XceI	RCATGY	1 cut(s)	1136
XhoI	CTCGAG	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	1592
XspI	CTAG	3 cut(s)	492, 933, 1323
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.