Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036063.1

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

229 .. 1534

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036063.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 616 bp

atgaattacacttctgaggaccagccatatcctcgtggggaaatctgtgtccggggtcccattgtcttccaaggctactacaaagatgaaaaccagacgaaggaagtaattgatgttgatggttggctgcatactggagacattggtttgtggttacctggaggccggcttaagatcattgataggaaaaagaacatcttcaagttggcacagggtgagtatatagcaccagagaagattgagaatgtctatgccaagtgccaatttgttgctcaatgttttgtatacggtgatagcttcaagtcttgtctagtagctatagttgcagtggatccgaatgtattgaaagagtgggctgcttctgaaggcataaagtacgaagatctcagacaattgtgcaataatccaagagtaaggtctgctgttttggctgacatggatgccattggaaaggaggctcagttgagaggttttgaatttgcaaaagctgtaactttagttcctgaaccattcacagtagataatggccttctcactccaaccttcaagatcaagaggcctcaagcaaaggcacactttgccgaagcaatatcaaacatgtattctgagctttcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

205

Amino Acids

23.07

Weight (kDa)

5.8

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AclWI	GGATC	2 cut(s)	326, 339
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	384
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflII	CTTAAG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	5 cut(s)	202, 301, 346, 476, 547
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	297, 317, 488, 610
AluI	AGCT	4 cut(s)	297, 317, 488, 610
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	326, 339
AoxI	GGCC	3 cut(s)	163, 526, 557
ApeKI	GCWGC	2 cut(s)	127, 356
ApoI	RAATTY	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	19, 56
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	227, 302
AvaII	GGWCC	2 cut(s)	19, 56
BamHI	GGATCC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	114, 343
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	318
BfrI	CTTAAG	1 cut(s)	170
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	2 cut(s)	128, 357
BlsI	GCNGC	2 cut(s)	129, 358
Bme1390I	CCNGG	2 cut(s)	53, 159
Bme18I	GGWCC	2 cut(s)	19, 56
BmgT120I	GGNCC	2 cut(s)	19, 56
BmiI	GGNNCC	3 cut(s)	57, 58, 333
BmrFI	CCNGG	2 cut(s)	53, 159
BmsI	GCATC	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	2 cut(s)	156, 180
BpuEI	CTTGAG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	52, 70
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	52, 70
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	6, 400, 473, 597
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	114, 343
BshFI	GGCC	3 cut(s)	165, 528, 559
BsiSI	CCGG	2 cut(s)	52, 166
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	165, 528, 559
Bsp143I	GATC	4 cut(s)	174, 331, 382, 549
BspANI	GGCC	3 cut(s)	165, 528, 559
BspCNI	CTCAG	4 cut(s)	7, 399, 472, 598
BspLI	GGNNCC	3 cut(s)	57, 58, 333
BspPI	GGATC	2 cut(s)	326, 339
BspTI	CTTAAG	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	52, 70
BssMI	GATC	4 cut(s)	174, 331, 382, 549
BssNAI	GTATAC	1 cut(s)	286
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	70
Bst1107I	GTATAC	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	290, 517
BstAFI	CTTAAG	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	4 cut(s)	15, 386, 459, 606
BstEII	GGTNACC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	4 cut(s)	177, 334, 385, 552
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	4 cut(s)	174, 331, 382, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 428, 578
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	601
BstPI	GGTNACC	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	51, 157
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	114, 343
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	331, 382
BstYI	RGATCY	2 cut(s)	331, 382
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	165, 528, 559
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	19, 56
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	2 cut(s)	436, 598
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	4 cut(s)	15, 386, 459, 606
DpnI	GATC	4 cut(s)	176, 333, 384, 551
DpnII	GATC	4 cut(s)	174, 331, 382, 549
DraIII	CACNNNGTG	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	559
Eco47I	GGWCC	2 cut(s)	19, 56
Eco57I	CTGAAG	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	2 cut(s)	439, 601
FalI	AAGNNNNNCTT	4 cut(s)	182, 214, 560, 592
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	2 cut(s)	435, 597
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	128, 357
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	128, 357
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	128, 357
GsuI	CTGGAG	2 cut(s)	156, 180
HaeIII	GGCC	3 cut(s)	165, 528, 559
HapII	CCGG	2 cut(s)	52, 166
Hin1II	CATG	2 cut(s)	439, 601
HpaII	CCGG	2 cut(s)	52, 166
HphI	GGTGA	2 cut(s)	227, 302
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	5 cut(s)	16, 336, 364, 389, 607
Hpy188III	TCNNGA	3 cut(s)	503, 547, 553
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	4 cut(s)	94, 359, 539, 553
HpyCH4III	ACNGT	2 cut(s)	290, 517
HpyCH4V	TGCA	4 cut(s)	130, 326, 399, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 428, 578
HpyF3I	CTNAG	4 cut(s)	15, 386, 459, 606
Hsp92II	CATG	2 cut(s)	439, 601
KflI	GGGWCCC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Kzo9I	GATC	4 cut(s)	174, 331, 382, 549
Lsp1109I	GCAGC	2 cut(s)	114, 343
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	153, 490
MalI	GATC	4 cut(s)	176, 333, 384, 551
MboI	GATC	4 cut(s)	174, 331, 382, 549
MboII	GAAGA	4 cut(s)	58, 190, 247, 392
MfeI	CAATTG	1 cut(s)	392
MflI	RGATCY	2 cut(s)	331, 382
MluCI	AATT	5 cut(s)	4, 108, 263, 392, 476
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	7 cut(s)	10, 42, 155, 448, 461, 549, 570
MroNI	GCCGGC	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	171
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	2 cut(s)	52, 166
MspR9I	CCNGG	2 cut(s)	53, 159
MunI	CAATTG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	323, 428, 578
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	174, 331, 382, 549
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	2 cut(s)	439, 601
NlaIV	GGNNCC	3 cut(s)	57, 58, 333
NspI	RCATGY	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	559
PciI	ACATGT	1 cut(s)	597
PdiI	GCCGGC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	129, 358
PpuMI	RGGWCCY	1 cut(s)	56
PscI	ACATGT	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	57, 58, 333
PspPI	GGNCC	2 cut(s)	19, 56
PspPPI	RGGWCCY	1 cut(s)	56
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PsuI	RGATCY	2 cut(s)	331, 382
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	128, 357
Sau3AI	GATC	4 cut(s)	174, 331, 382, 549
Sau96I	GGNCC	2 cut(s)	19, 56
ScrFI	CCNGG	2 cut(s)	53, 159
SetI	ASST	8 cut(s)	160, 299, 319, 419, 472, 490, 545, 612
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	19, 56
SmlI	CTYRAG	2 cut(s)	170, 561
SmoI	CTYRAG	2 cut(s)	170, 561
Sse9I	AATT	5 cut(s)	4, 108, 263, 392, 476
SseBI	AGGCCT	1 cut(s)	559
SspMI	CTAG	1 cut(s)	311
StuI	AGGCCT	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	51, 157
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	290, 517
TasI	AATT	5 cut(s)	4, 108, 263, 392, 476
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	333
TseI	GCWGC	2 cut(s)	127, 356
TspDTI	ATGAA	2 cut(s)	17, 102
TspRI	CASTG	1 cut(s)	333
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	19, 56
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.