Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

65899413 .. 65900526

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTGGAGAGATTTTCCTGTGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCTACAAGGTCTAACCAAAGATGGGCTGTTGGAGTCACTGTGGCAGTTTCTCAGTCTGTTAATTGGAACTTGGAAGAAGTTAAAATCAGAAAACAGGTCAAATGGCCCAAAAAGAAAAATGGTGACTCTGTTAAGAGGAGCGATCAAATGCTTGGTCAACGCCAAGTCGACGAGAAGAAGGCGGGTCCATATGTGTGGACTACATATCAAGAGGTGTATGATGCAGCCATTCGTATGGGTTCAGCCATCAGAAGCTGTGGTGTCAATCCTGGAGATCGTAGTGGTATATATGGATCAAATTGCCCCCAATGGATTATTGCAATGGAGGTAATAATACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

131

Amino Acids

14.94

Weight (kDa)

9.89

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	79 - 125	2.5e-10	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	2 cut(s)	53, 306
AluI	AGCT	2 cut(s)	53, 306
AlwI	GGATC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspS9I	GGNCC	2 cut(s)	156, 236
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	66, 305
BciT130I	CCWGG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	156, 236
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	73
BsnI	GGCC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	193, 325, 344
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	378
BssMI	GATC	3 cut(s)	193, 325, 344
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	91, 390
BstDEI	CTNAG	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	196, 328, 347
BstMBI	GATC	3 cut(s)	193, 325, 344
BstNI	CCWGG	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	287
BstXI	CCANNNNNNTGG	2 cut(s)	246, 286
BsuRI	GGCC	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	156, 236
CviJI	RGCY	6 cut(s)	53, 77, 157, 278, 296, 306
CviKI_1	RGCY	6 cut(s)	53, 77, 157, 278, 296, 306
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	195, 327, 346
DpnII	GATC	3 cut(s)	193, 325, 344
Eco47I	GGWCC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	319
FaiI	YATR	8 cut(s)	241, 243, 256, 270, 287, 338, 340, 342
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	157
HincII	GTYRAC	2 cut(s)	209, 220
HindII	GTYRAC	2 cut(s)	209, 220
HinfI	GANTC	2 cut(s)	84, 176
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	209, 220, 249
Hpy188I	TCNGA	2 cut(s)	140, 302
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	209, 220, 249
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	91, 390
HpyCH4V	TGCA	2 cut(s)	275, 371
HpyF3I	CTNAG	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	193, 325, 344
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	5 cut(s)	25, 30, 131, 306, 333
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	262
MaeIII	GTNAC	3 cut(s)	42, 85, 173
MalI	GATC	3 cut(s)	195, 327, 346
MboI	GATC	3 cut(s)	193, 325, 344
MboII	GAAGA	2 cut(s)	137, 238
MluCI	AATT	2 cut(s)	112, 349
MlyI	GAGTC	2 cut(s)	93, 170
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	15, 180, 256, 370
MseI	TTAA	3 cut(s)	111, 132, 183
MslI	CAYNNNNRTG	2 cut(s)	244, 284
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	3 cut(s)	193, 325, 344
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	85, 173
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	2 cut(s)	92, 170
PpsI	GAGTC	2 cut(s)	92, 170
Psp6I	CCWGG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	156, 236
PstNI	CAGNNNCTG	1 cut(s)	306
RseI	CAYNNNNRTG	2 cut(s)	244, 284
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	111, 132, 183
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	193, 325, 344
Sau96I	GGNCC	2 cut(s)	156, 236
SchI	GAGTC	2 cut(s)	93, 170
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	7 cut(s)	33, 55, 62, 150, 267, 308, 381
SfaNI	GCATC	1 cut(s)	262
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	244, 284
Sse9I	AATT	2 cut(s)	112, 349
SsiI	CCGC	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	91, 390
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	112, 349
Tru1I	TTAA	3 cut(s)	111, 132, 183
Tru9I	TTAA	3 cut(s)	111, 132, 183
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	2 cut(s)	85, 173
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	85, 173
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.