Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

57615712 .. 57622785

Gene Structure 7074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGTACCGATTGAAACTCCAACCCTCATCAAAGTATGTCGGAGGCCCAAAACTGAAAAGATATCTGCCGCCTAGGAGGGTACCAGTGAAGGGAAAGCAGTGCTTTTCTTGTTTTGTTCAAGCCGGAGCAGTGATTGTAGTCACAGTAGTGTCAAAAGTGTCGAAGCTTATTCTCCAAGTGCTGCTTGTTGGTTTGTTTGAATTGGTGCTTTGGGAAGGAAATTTGGAGGCCTTACTGAAAGCTGTGGTTGGTTTCCCCCTGACAACTATTGAAGCATGGCTTGAGTTGGTCCCAGAACTGGGATATGATGCAATTTCTAGTGTGCCACGTGGAGAGATTTCCCTGAGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCTACAAGGTCTAACCAAAGATGGGCTGTTGGAGTCACTGTGGCAGTTTCTCAGGAACCCAAGCGGTCAAATGCTTGGTCAATGCCAAGTCAACGAGAAGAAGGCGGGTCCATATGTGTGGACTACATATCAAGAGGTGTATGATGCAGCCATTCATGTGGGTTCAGCCATCAGAAGCCATGGTGTCAATCCTTGGCAGATAGTGAACTTCAATGATGGTGCTAATGCAGTGGAGTTCATCATCAATCATGCTGAAGTTTCAATAGCTTTTGAGAGAACAAAATCCCTGCTCTTCACAGATGTTTGTAGCACTCAAAAGAAGGAAGCAGAAGAACTGGGGGTATCTTGCTTTTCATGGGAGGAATTCTTTCAGTTGGGAGATTCAGATTGTGAACTACCTCCAAAACAGAGGACTGCTGTTTGCACAATAATGTATACAAGTGGAACGACTGGAGAACCAAAAAGCGTAATCGTTAGTAATGCAGCATTAATGTCAGAAGTATTGTCAACAGACAATATATTTTTCCTAACAGATAGAGTGGATGTCAGGTTTTTACTGGACGACCTTCAGGAGCTAAAGCCTACTATGTTTTGTGGGGTTACTCGAGTGTATGATCGTATATACACTGGTACTGCTAGTAAAGTTTCATCTGGTGGTGTGCTGAGGAAGACCCTTTTCCATTATGCATATAACTATCGGTCCCAGAACTGGGGATATGATGCACTTTCTAGTGCGCCACGTGGAGAGATTTGGCTAGGGGGAAAAACCTTGTTTTCTGGTTACTACAAGCGACAAGATCTCACTGAAGAAGTCCTTATTGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAAGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTATCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCGTCATTTGACTGATGACTACAAATCATTGTGTCAAAACATGAAGGCAAGAAAATACATTTTGGGTGAGCTCAATAGTATGGGTCAGAAACAGCATCTTCGAGGGTTTGAGTGGTTAAAAGCAGTTCATTTGGAGCCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCAACTTTCAAACTGAAAAGACTGCAATTACTCAAATATTACCAGGACCAAGTTGAAAAACTTTGTAGTGGAGCAAAGGGTGGAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

568

Amino Acids

64.1

Weight (kDa)

8.3

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	194 - 296	1.9e-12	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	812
AciI	CCGC	3 cut(s)	68, 441, 482
AclWI	GGATC	1 cut(s)	1611
AcsI	RAATTY	2 cut(s)	220, 740
AcuI	CTGAAG	3 cut(s)	651, 929, 1203
AcvI	CACGTG	2 cut(s)	329, 1118
AfaI	GTAC	3 cut(s)	5, 81, 1009
AfiI	CCNNNNNNNGG	6 cut(s)	89, 298, 299, 399, 1086, 1087
AgsI	TTSAA	9 cut(s)	13, 119, 200, 272, 589, 639, 1322, 1624, 1670
AjnI	CCWGG	1 cut(s)	1656
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	8 cut(s)	166, 242, 379, 644, 952, 1377, 1439, 1513
AluI	AGCT	8 cut(s)	166, 242, 379, 644, 952, 1377, 1439, 1513
Alw21I	GWGCWC	1 cut(s)	1515
Alw26I	GTCTC	1 cut(s)	1293
AlwI	GGATC	1 cut(s)	1611
Ama87I	CYCGRG	1 cut(s)	981
AoxI	GGCC	3 cut(s)	43, 228, 1419
ApeKI	GCWGC	5 cut(s)	181, 524, 860, 1234, 1436
ApoI	RAATTY	2 cut(s)	220, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
AseI	ATTAAT	1 cut(s)	866
Asp700I	GAANNNNTTC	2 cut(s)	744, 1376
Asp718I	GGTACC	1 cut(s)	79
AspA2I	CCTAGG	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	1114
AspS9I	GGNCC	5 cut(s)	44, 289, 485, 1077, 1660
AsuHPI	GGTGA	3 cut(s)	1229, 1307, 1520
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	4 cut(s)	289, 485, 1077, 1660
AvrII	CCTAGG	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	1515
BbrPI	CACGTG	2 cut(s)	329, 1118
BbsI	GAAGAC	1 cut(s)	1052
Bbv12I	GWGCWC	1 cut(s)	1515
BbvCI	CCTCAGC	1 cut(s)	1040
BbvI	GCAGC	5 cut(s)	168, 536, 872, 1246, 1448
BccI	CCATC	4 cut(s)	392, 554, 587, 1193
BciT130I	CCWGG	1 cut(s)	1658
BcoDI	GTCTC	1 cut(s)	1293
BfaI	CTAG	5 cut(s)	72, 318, 1014, 1107, 1133
BglII	AGATCT	1 cut(s)	1174
BisI	GCNGC	6 cut(s)	68, 182, 525, 861, 1235, 1437
BlnI	CCTAGG	1 cut(s)	71
BlpI	GCTNAGC	1 cut(s)	1440
BlsI	GCNGC	6 cut(s)	69, 183, 526, 862, 1236, 1438
Bme1390I	CCNGG	1 cut(s)	1658
Bme18I	GGWCC	4 cut(s)	289, 485, 1077, 1660
BmeT110I	CYCGRG	1 cut(s)	981
BmgT120I	GGNCC	5 cut(s)	44, 289, 485, 1077, 1660
BmiI	GGNNCC	7 cut(s)	81, 291, 434, 486, 1079, 1208, 1578
BmrFI	CCNGG	1 cut(s)	1658
BmrI	ACTGGG	4 cut(s)	308, 722, 1096, 1441
BmsI	GCATC	4 cut(s)	298, 511, 1087, 1546
BmuI	ACTGGG	4 cut(s)	308, 722, 1096, 1441
BpiI	GAAGAC	1 cut(s)	1052
BpmI	CTGGAG	1 cut(s)	849
Bpu10I	CCTNAGC	1 cut(s)	1040
Bpu1102I	GCTNAGC	1 cut(s)	1440
BpuEI	CTTGAG	2 cut(s)	302, 1275
Bsa29I	ATCGAT	1 cut(s)	1355
BsaAI	YACGTR	2 cut(s)	329, 1118
BsaJI	CCNNGG	4 cut(s)	71, 556, 569, 1422
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 298, 299, 399, 1086, 1087
Bse1I	ACTGG	8 cut(s)	83, 303, 717, 832, 939, 1009, 1091, 1436
Bse3DI	GCAATG	2 cut(s)	1254, 1343
BseBI	CCWGG	1 cut(s)	1658
BseCI	ATCGAT	1 cut(s)	1355
BseDI	CCNNGG	4 cut(s)	71, 556, 569, 1422
BseGI	GGATG	1 cut(s)	925
BseLI	CCNNNNNNNGG	6 cut(s)	89, 298, 299, 399, 1086, 1087
BseMI	GCAATG	2 cut(s)	1254, 1343
BseMII	CTCAG	4 cut(s)	335, 442, 1031, 1431
BseNI	ACTGG	8 cut(s)	83, 303, 717, 832, 939, 1009, 1091, 1436
BseXI	GCAGC	5 cut(s)	168, 536, 872, 1246, 1448
BshFI	GGCC	3 cut(s)	45, 230, 1421
BshNI	GGYRCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	1355
BsiHKAI	GWGCWC	1 cut(s)	1515
BsiHKCI	CYCGRG	1 cut(s)	981
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	275, 1063
BslI	CCNNNNNNNGG	6 cut(s)	89, 298, 299, 399, 1086, 1087
BsmAI	GTCTC	1 cut(s)	1293
BsmFI	GGGAC	2 cut(s)	275, 1063
BsnI	GGCC	3 cut(s)	45, 230, 1421
BsoBI	CYCGRG	1 cut(s)	981
Bsp1286I	GDGCHC	1 cut(s)	1515
Bsp143I	GATC	3 cut(s)	991, 1174, 1603
Bsp1720I	GCTNAGC	1 cut(s)	1440
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	3 cut(s)	68, 441, 482
BspANI	GGCC	3 cut(s)	45, 230, 1421
BspCNI	CTCAG	4 cut(s)	336, 441, 1032, 1432
BspDI	ATCGAT	1 cut(s)	1355
BspHI	TCATGA	1 cut(s)	1608
BspLI	GGNNCC	7 cut(s)	81, 291, 434, 486, 1079, 1208, 1578
BspPI	GGATC	1 cut(s)	1611
BspQI	GCTCTTC	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	1254, 1343
BsrI	ACTGG	8 cut(s)	83, 303, 717, 832, 939, 1009, 1091, 1436
BssECI	CCNNGG	4 cut(s)	71, 556, 569, 1422
BssMI	GATC	3 cut(s)	991, 1174, 1603
BssNAI	GTATAC	1 cut(s)	813
BssT1I	CCWWGG	4 cut(s)	71, 556, 569, 1422
Bst1107I	GTATAC	1 cut(s)	813
Bst2UI	CCWGG	1 cut(s)	1658
Bst4CI	ACNGT	3 cut(s)	145, 417, 1287
Bst6I	CTCTTC	1 cut(s)	674
BstBAI	YACGTR	2 cut(s)	329, 1118
BstDEI	CTNAG	4 cut(s)	344, 428, 1040, 1440
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	1114
BstKTI	GATC	3 cut(s)	994, 1177, 1606
BstMAI	GTCTC	1 cut(s)	1293
BstMBI	GATC	3 cut(s)	991, 1174, 1603
BstMWI	GCNNNNNNNGC	1 cut(s)	1323
BstNI	CCWGG	1 cut(s)	1658
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	1656
BstV1I	GCAGC	5 cut(s)	168, 536, 872, 1246, 1448
BstV2I	GAAGAC	1 cut(s)	1052
BstX2I	RGATCY	2 cut(s)	1174, 1603
BstXI	CCANNNNNNTGG	2 cut(s)	495, 535
BstYI	RGATCY	2 cut(s)	1174, 1603
BstZ17I	GTATAC	1 cut(s)	813
Bsu15I	ATCGAT	1 cut(s)	1355
BsuRI	GGCC	3 cut(s)	45, 230, 1421
BsuTUI	ATCGAT	1 cut(s)	1355
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	925
BtsI	GCAGTG	3 cut(s)	104, 135, 612
BtsIMutI	CAGTG	7 cut(s)	90, 104, 135, 413, 612, 1002, 1179
CciI	TCATGA	1 cut(s)	1608
CfoI	GCGC	1 cut(s)	1114
Cfr13I	GGNCC	5 cut(s)	44, 289, 485, 1077, 1660
ClaI	ATCGAT	1 cut(s)	1355
CseI	GACGC	1 cut(s)	1433
Csp6I	GTAC	3 cut(s)	4, 80, 1008
CviAII	CATG	7 cut(s)	276, 533, 557, 626, 732, 1483, 1609
CviQI	GTAC	3 cut(s)	4, 80, 1008
DdeI	CTNAG	4 cut(s)	344, 428, 1040, 1440
DpnI	GATC	3 cut(s)	993, 1176, 1605
DpnII	GATC	3 cut(s)	991, 1174, 1603
DraI	TTTAAA	1 cut(s)	1282
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Ecl136II	GAGCTC	1 cut(s)	1513
Eco130I	CCWWGG	4 cut(s)	71, 556, 569, 1422
Eco147I	AGGCCT	2 cut(s)	230, 1421
Eco24I	GRGCYC	1 cut(s)	1515
Eco32I	GATATC	1 cut(s)	62
Eco47I	GGWCC	4 cut(s)	289, 485, 1077, 1660
Eco53kI	GAGCTC	1 cut(s)	1513
Eco57I	CTGAAG	3 cut(s)	651, 929, 1203
Eco72I	CACGTG	2 cut(s)	329, 1118
Eco88I	CYCGRG	1 cut(s)	981
Eco91I	GGTNACC	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	1513
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	1656
EcoRV	GATATC	1 cut(s)	62
EcoT14I	CCWWGG	4 cut(s)	71, 556, 569, 1422
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	1515
ErhI	CCWWGG	4 cut(s)	71, 556, 569, 1422
FaeI	CATG	7 cut(s)	279, 536, 560, 629, 735, 1486, 1612
FalI	AAGNNNNNCTT	8 cut(s)	86, 118, 168, 200, 264, 296, 1176, 1208
FaqI	GGGAC	2 cut(s)	275, 1063
FatI	CATG	7 cut(s)	275, 532, 556, 625, 731, 1482, 1608
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	812
Fnu4HI	GCNGC	6 cut(s)	68, 182, 525, 861, 1235, 1437
FokI	GGATG	1 cut(s)	932
FriOI	GRGCYC	1 cut(s)	1515
Fsp4HI	GCNGC	6 cut(s)	68, 182, 525, 861, 1235, 1437
FspBI	CTAG	5 cut(s)	72, 318, 1014, 1107, 1133
GlaI	GCGC	1 cut(s)	1113
GluI	GCNGC	6 cut(s)	68, 182, 525, 861, 1235, 1437
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	3 cut(s)	45, 230, 1421
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	1433
HhaI	GCGC	1 cut(s)	1114
Hin1II	CATG	7 cut(s)	279, 536, 560, 629, 735, 1486, 1612
Hin6I	GCGC	1 cut(s)	1112
HinP1I	GCGC	1 cut(s)	1112
HincII	GTYRAC	2 cut(s)	469, 885
HindII	GTYRAC	2 cut(s)	469, 885
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	4 cut(s)	410, 758, 1382, 1612
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	3 cut(s)	1229, 1307, 1520
Hpy166II	GTNNAC	6 cut(s)	469, 498, 583, 770, 813, 885
Hpy188I	TCNGA	5 cut(s)	41, 551, 763, 874, 1530
Hpy188III	TCNNGA	5 cut(s)	430, 509, 947, 1409, 1609
Hpy8I	GTNNAC	6 cut(s)	469, 498, 583, 770, 813, 885
HpyAV	CCTTC	6 cut(s)	82, 209, 472, 691, 953, 1480
HpyCH4III	ACNGT	3 cut(s)	145, 417, 1287
HpyCH4IV	ACGT	2 cut(s)	328, 1117
HpyCH4V	TGCA	9 cut(s)	311, 524, 605, 801, 860, 1064, 1100, 1336, 1639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1323
HpyF3I	CTNAG	4 cut(s)	344, 428, 1040, 1440
HpySE526I	ACGT	2 cut(s)	328, 1117
Hsp92II	CATG	7 cut(s)	279, 536, 560, 629, 735, 1486, 1612
HspAI	GCGC	1 cut(s)	1112
KpnI	GGTACC	1 cut(s)	83
Kzo9I	GATC	3 cut(s)	991, 1174, 1603
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	5 cut(s)	125, 949, 1244, 1576, 1685
Lsp1109I	GCAGC	5 cut(s)	168, 536, 872, 1246, 1448
LweI	GCATC	4 cut(s)	298, 511, 1087, 1546
MaeI	CTAG	5 cut(s)	72, 318, 1014, 1107, 1133
MaeII	ACGT	2 cut(s)	328, 1117
MaeIII	GTNAC	5 cut(s)	139, 368, 411, 976, 1157
MalI	GATC	3 cut(s)	993, 1176, 1605
MboI	GATC	3 cut(s)	991, 1174, 1603
MboII	GAAGA	6 cut(s)	487, 661, 719, 1057, 1196, 1532
MflI	RGATCY	2 cut(s)	1174, 1603
MhlI	GDGCHC	1 cut(s)	1515
MluCI	AATT	5 cut(s)	200, 220, 312, 740, 1640
MlyI	GAGTC	3 cut(s)	419, 1391, 1606
MmeI	TCCRAC	4 cut(s)	19, 43, 387, 1640
Mph1103I	ATGCAT	1 cut(s)	1066
MroXI	GAANNNNTTC	2 cut(s)	744, 1376
MseI	TTAA	3 cut(s)	866, 1281, 1559
MslI	CAYNNNNRTG	5 cut(s)	146, 493, 533, 806, 1215
MspA1I	CMGCKG	1 cut(s)	1439
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	1658
MvaI	CCWGG	1 cut(s)	1658
MwoI	GCNNNNNNNGC	1 cut(s)	1323
NcoI	CCATGG	1 cut(s)	556
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	3 cut(s)	991, 1174, 1603
NlaIII	CATG	7 cut(s)	279, 536, 560, 629, 735, 1486, 1612
NlaIV	GGNNCC	7 cut(s)	81, 291, 434, 486, 1079, 1208, 1578
NmuCI	GTSAC	2 cut(s)	139, 411
NsiI	ATGCAT	1 cut(s)	1066
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	981
PagI	TCATGA	1 cut(s)	1608
PceI	AGGCCT	2 cut(s)	230, 1421
PciSI	GCTCTTC	1 cut(s)	674
PdmI	GAANNNNTTC	2 cut(s)	744, 1376
PfeI	GAWTC	1 cut(s)	758
PkrI	GCNGC	6 cut(s)	69, 183, 526, 862, 1236, 1438
PleI	GAGTC	3 cut(s)	418, 1390, 1606
PmaCI	CACGTG	2 cut(s)	329, 1118
PmlI	CACGTG	2 cut(s)	329, 1118
PpsI	GAGTC	3 cut(s)	418, 1390, 1606
Ppu21I	YACGTR	2 cut(s)	329, 1118
PshBI	ATTAAT	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	1515
Psp6I	CCWGG	1 cut(s)	1656
PspCI	CACGTG	2 cut(s)	329, 1118
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	1656
PspN4I	GGNNCC	7 cut(s)	81, 291, 434, 486, 1079, 1208, 1578
PspPI	GGNCC	5 cut(s)	44, 289, 485, 1077, 1660
PspXI	VCTCGAGB	1 cut(s)	981
PsuI	RGATCY	2 cut(s)	1174, 1603
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	3 cut(s)	5, 81, 1009
RsaNI	GTAC	3 cut(s)	4, 80, 1008
RseI	CAYNNNNRTG	5 cut(s)	146, 493, 533, 806, 1215
SacI	GAGCTC	1 cut(s)	1515
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	3 cut(s)	866, 1281, 1559
SatI	GCNGC	6 cut(s)	68, 182, 525, 861, 1235, 1437
Sau3AI	GATC	3 cut(s)	991, 1174, 1603
Sau96I	GGNCC	5 cut(s)	44, 289, 485, 1077, 1660
SchI	GAGTC	3 cut(s)	419, 1391, 1606
ScrFI	CCNGG	1 cut(s)	1658
SduI	GDGCHC	1 cut(s)	1515
SfaNI	GCATC	4 cut(s)	298, 511, 1087, 1546
Sfr274I	CTCGAG	1 cut(s)	981
SinI	GGWCC	4 cut(s)	289, 485, 1077, 1660
SlaI	CTCGAG	1 cut(s)	981
SmiMI	CAYNNNNRTG	5 cut(s)	146, 493, 533, 806, 1215
SmlI	CTYRAG	3 cut(s)	281, 981, 1290
SmoI	CTYRAG	3 cut(s)	281, 981, 1290
Sse9I	AATT	5 cut(s)	200, 220, 312, 740, 1640
SseBI	AGGCCT	2 cut(s)	230, 1421
SsiI	CCGC	3 cut(s)	68, 441, 482
SspI	AATATT	1 cut(s)	1652
SspMI	CTAG	5 cut(s)	72, 318, 1014, 1107, 1133
SstI	GAGCTC	1 cut(s)	1515
StuI	AGGCCT	2 cut(s)	230, 1421
StyD4I	CCNGG	1 cut(s)	1656
StyI	CCWWGG	4 cut(s)	71, 556, 569, 1422
TaaI	ACNGT	3 cut(s)	145, 417, 1287
TaiI	ACGT	2 cut(s)	331, 1120
TaqI	TCGA	5 cut(s)	161, 982, 1355, 1380, 1543
TaqII	GACCGA	1 cut(s)	1065
TasI	AATT	5 cut(s)	200, 220, 312, 740, 1640
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	3 cut(s)	866, 1281, 1559
Tru9I	TTAA	3 cut(s)	866, 1281, 1559
TscAI	CASTG	7 cut(s)	90, 104, 135, 420, 612, 1009, 1186
TseFI	GTSAC	2 cut(s)	139, 411
TseI	GCWGC	5 cut(s)	181, 524, 860, 1234, 1436
Tsp45I	GTSAC	2 cut(s)	139, 411
TspDTI	ATGAA	7 cut(s)	521, 604, 720, 1014, 1265, 1499, 1559
TspRI	CASTG	7 cut(s)	90, 104, 135, 420, 612, 1009, 1186
VpaK11BI	GGWCC	4 cut(s)	289, 485, 1077, 1660
VspI	ATTAAT	1 cut(s)	866
XapI	RAATTY	2 cut(s)	220, 740
XhoI	CTCGAG	1 cut(s)	981
XmaJI	CCTAGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	812
XmnI	GAANNNNTTC	2 cut(s)	744, 1376
XspI	CTAG	5 cut(s)	72, 318, 1014, 1107, 1133
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.