Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010754

Physical Location & Seq

Genomic Coordinates Forward (+)

12404220 .. 12409379

Gene Structure 5160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1085600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTTGGTTTTGAAAGACGAAGATCCTCGCATCCATGGCATTAAAACCAAGATTCGTGTCGTCCCAAATTTCCCCAAACCTGGAATTATGTTTCAAGATATCACAACTTTGTTACTTGACCCAAAAGCCTTTAAGGACACAATCGATTTGTTCGTTGAGAGATACAAAGGCAAAAACATTTCAGTGGTTGCAGGAATTGAGGCACGAGGTTTTATCTTTGGTCCTCCGATAGCATTGGCAATAGGAGCAAAGTTCGTTCCCCTGAGAAAACCAAGGAAGCTGCCTGGTGACGTTATTTTTGAAGAATACACTCTGGAATATGGAAAGGACCGTCTTGAGATGCATGTTGGAGCAGTAGAACTTGGCGAGCGTGCTCTGGTGGTAGATGATTTAATAGCCACTGGGGGCACACTGTGTGCTGCAATGAATTTATTGGAACGCGTTGGAGCAGAAGTGGTCGAATGTGCATGCTTAATTGAATTGCCAGATTTACAAGGACGTGAGAGGTTGAACGGAAAGCCACTGTATGTACTAGTTGAATACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

183

Amino Acids

20.22

Weight (kDa)

5.79

Isoelectric Point (pI)

22.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	41 - 164	2e-18	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12440 AT4G12440 AT4G22570
fragaria_vesca	FvH4_5g00190
malus_domestica	MD04G1085600.v1.1 MD06G1062600.v1.1
prunus_persica	Prupe.5G074000_v2.0.a1 Prupe.5G074000_v2.0.a1
pyrus_communis	pycom04g07680
rosa_chinensis	RchiOBHm_Chr7g0202681
rosa_laevigata	RLG00000003580
rosa_multiflora	Rmu_sc0002365.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254400
rosa_rugosa	Rorug07G0072000 Rorug07G0072100
rosa_samantha	Rh7AG199800 Rh7BG200500 Rh7CG211300 Rh7DG206700
rosa_wichuraiana	Rw7G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	441
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	67, 427
AdeI	CACNNNGTG	2 cut(s)	414, 416
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	6 cut(s)	13, 95, 302, 479, 511, 539
AhlI	ACTAGT	1 cut(s)	532
AjiI	CACGTC	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	79, 283
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	280, 419
ApoI	RAATTY	2 cut(s)	67, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	2 cut(s)	221, 328
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	221, 328
BaeGI	GKGCMC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	267, 406
BciT130I	CCWGG	2 cut(s)	81, 285
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	281, 420
BlsI	GCNGC	2 cut(s)	282, 421
Bme1390I	CCNGG	2 cut(s)	81, 285
Bme18I	GGWCC	2 cut(s)	221, 328
BmgBI	CACGTC	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	221, 328
BmrFI	CCNGG	2 cut(s)	81, 285
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	39, 330
BmuI	ACTGGG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	356
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	34, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	81, 285
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	34, 272
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	406
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	267, 406
Bsh1236I	CGCG	1 cut(s)	441
BshVI	ATCGAT	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	376, 410
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	255
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	441
BspPI	GGATC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	34, 272
BssMI	GATC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	34, 272
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	81, 285
Bst4CI	ACNGT	3 cut(s)	332, 414, 525
BstC8I	GCNNGC	3 cut(s)	368, 372, 469
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 245
BstNI	CCWGG	2 cut(s)	81, 285
BstNSI	RCATGY	2 cut(s)	347, 471
BstSCI	CCNGG	2 cut(s)	79, 283
BstSLI	GKGCMC	1 cut(s)	410
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	267, 406
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	189, 399, 410, 521
Cac8I	GCNNGC	3 cut(s)	368, 372, 469
Cfr13I	GGNCC	2 cut(s)	221, 328
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	3 cut(s)	35, 344, 468
CviJI	RGCY	4 cut(s)	128, 280, 398, 520
CviKI_1	RGCY	4 cut(s)	128, 280, 398, 520
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraIII	CACNNNGTG	2 cut(s)	414, 416
Eco130I	CCWWGG	2 cut(s)	34, 272
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	221, 328
EcoRII	CCWGG	2 cut(s)	79, 283
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	34, 272
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	2 cut(s)	34, 272
FaeI	CATG	3 cut(s)	38, 347, 471
FaiI	YATR	6 cut(s)	36, 89, 321, 345, 469, 528
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	34, 343, 467
Fnu4HI	GCNGC	2 cut(s)	281, 420
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	281, 420
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	2 cut(s)	281, 420
Hin1II	CATG	3 cut(s)	38, 347, 471
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	3 cut(s)	95, 314, 335
HpyCH4III	ACNGT	3 cut(s)	332, 414, 525
HpyCH4IV	ACGT	2 cut(s)	291, 499
HpyCH4V	TGCA	4 cut(s)	191, 343, 422, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 245
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	2 cut(s)	291, 499
Hsp92II	CATG	3 cut(s)	38, 347, 471
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	245, 350, 446
Lsp1109I	GCAGC	2 cut(s)	267, 406
LweI	GCATC	2 cut(s)	39, 330
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	2 cut(s)	291, 499
MaeIII	GTNAC	2 cut(s)	111, 287
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	32, 314
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	376, 410
MluCI	AATT	6 cut(s)	67, 84, 195, 427, 474, 479
MluI	ACGCGT	1 cut(s)	439
MmeI	TCCRAC	2 cut(s)	328, 424
MnlI	CCTC	5 cut(s)	36, 193, 200, 234, 498
Mph1103I	ATGCAT	1 cut(s)	345
MseI	TTAA	4 cut(s)	42, 132, 392, 473
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	81, 285
MvaI	CCWGG	2 cut(s)	81, 285
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	36, 245
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	38, 347, 471
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	2 cut(s)	347, 471
PaeI	GCATGC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	282, 421
Psp6I	CCWGG	2 cut(s)	79, 283
PspGI	CCWGG	2 cut(s)	79, 283
PspPI	GGNCC	2 cut(s)	221, 328
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	42, 132, 392, 473
SatI	GCNGC	2 cut(s)	281, 420
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	2 cut(s)	221, 328
ScrFI	CCNGG	2 cut(s)	81, 285
SduI	GDGCHC	2 cut(s)	376, 410
SetI	ASST	6 cut(s)	82, 211, 282, 294, 502, 509
SfaNI	GCATC	2 cut(s)	39, 330
SinI	GGWCC	2 cut(s)	221, 328
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SpeI	ACTAGT	1 cut(s)	532
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	6 cut(s)	67, 84, 195, 427, 474, 479
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	79, 283
StyI	CCWWGG	2 cut(s)	34, 272
TaaI	ACNGT	3 cut(s)	332, 414, 525
TaiI	ACGT	2 cut(s)	294, 502
TaqI	TCGA	2 cut(s)	144, 459
TasI	AATT	6 cut(s)	67, 84, 195, 427, 474, 479
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	4 cut(s)	42, 132, 392, 473
Tru9I	TTAA	4 cut(s)	42, 132, 392, 473
TscAI	CASTG	4 cut(s)	189, 406, 417, 528
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	280, 419
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	4 cut(s)	189, 406, 417, 528
VpaK11BI	GGWCC	2 cut(s)	221, 328
XapI	RAATTY	2 cut(s)	67, 427
XceI	RCATGY	2 cut(s)	347, 471
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.