AT4G16350

Calcineurin B-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9242274 .. 9243912
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16350.1

Sequence Viewer

Length: 681 bp
ATGATGATGCAATGTTTAGATGGATTAAAGCACTTAGCCTTAATTCTGTTGACTTGTTGTGATGCTGATCCTCCCAAGGTTCGTCAGAACCCTAAGGATGTGGCTAGAGGCACTGTGTTTACAGTGAATGAGATTGAAGCTCTTTACGAACTGTTCAAGAGCATTAGCAAAAACGGGCTTATCGACAAGGAACAATTTCAATTGGTACTATTCAAAATGAACACAACGAGAAGCCTTTTTGCTGATAGGGTGTTTGACTTGTTTGATACCAAGAATACTGGGATTCTAGATTTTGAAGCCTTTGCTCGTTCACTTTCGGTCTTTCACCCTAATGCTAAATTTGAGGATAAGATTGAGTTCTCTTTCAAGCTGTATGATCTGAATCAGCAAGGTTATATAAAGAGACAGGAGGTGAAGCAAATGGTTGTGCGGACTCTAGCTGAATCTGGCATGAACCTTTCTGATCATGTGATTGAGAGCATCATAGACAAGACATTTGAAGAAGCTGATACTAAACTGGACGGGAAGATTGATAAGGAAGAGTGGAGGAGTCTTGTGTTGCGCCACCCCTCTCTGTTACAGAACATGAGCCTTCAACATCTCAAAGACGTAACAAAGACGTTTCCAAATTTTGTATTTCACACTATAGTGACAGACACTCCTAGTGAGCTGGATGGATGA

Protein Analysis

226

Amino Acids

26.03

Weight (kDa)

5.56

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 83 - 141 5.5e-06 EF-hand domain pair
EF-hand_7 PF13499 115 - 181 3.5e-09 EF-hand domain pair
EF-hand_5 PF13202 162 - 186 3.7e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16350 AT4G16350
malus_domestica MD11G1037200.v1.1
pyrus_communis pycom11g03090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 430
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 2 cut(s) 338, 628
AfaI GTAC 1 cut(s) 207
AgsI TTSAA 8 cut(s) 137, 157, 200, 214, 296, 367, 500, 596
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 5 cut(s) 140, 370, 440, 506, 670
AluI AGCT 5 cut(s) 140, 370, 440, 506, 670
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 338, 628
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 564
AsuHPI GGTGA 2 cut(s) 317, 424
AxyI CCTNAGG 1 cut(s) 93
BccI CCATC 2 cut(s) 14, 668
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 4 cut(s) 105, 287, 437, 663
BfmI CTRYAG 1 cut(s) 645
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 52, 489
BmuI ACTGGG 1 cut(s) 288
BsaBI GATNNNNATC 2 cut(s) 66, 381
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bse1I ACTGG 2 cut(s) 283, 522
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 17
Bse8I GATNNNNATC 2 cut(s) 66, 381
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 103, 679
BseJI GATNNNNATC 2 cut(s) 66, 381
BseMI GCAATG 1 cut(s) 17
BseNI ACTGG 2 cut(s) 283, 522
BseRI GAGGAG 1 cut(s) 562
BsmAI GTCTC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 67, 376, 463
BspACI CCGC 1 cut(s) 430
BspPI GGATC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 2 cut(s) 283, 522
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 67, 376, 463
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 115, 124, 153
Bst6I CTCTTC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 34, 93
BstF5I GGATG 2 cut(s) 103, 679
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 3 cut(s) 70, 379, 466
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 3 cut(s) 67, 376, 463
BstSFI CTRYAG 1 cut(s) 645
Bsu36I CCTNAGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 103, 679
BtsIMutI CAGTG 2 cut(s) 111, 129
CfoI GCGC 1 cut(s) 564
Csp6I GTAC 1 cut(s) 206
CviAII CATG 3 cut(s) 451, 467, 586
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 34, 93
DpnI GATC 3 cut(s) 69, 378, 465
DpnII GATC 3 cut(s) 67, 376, 463
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 3 cut(s) 454, 470, 589
FaiI YATR 8 cut(s) 375, 396, 398, 452, 468, 485, 587, 647
FatI CATG 3 cut(s) 450, 466, 585
FbaI TGATCA 1 cut(s) 463
FokI GGATG 1 cut(s) 110
FspBI CTAG 4 cut(s) 105, 287, 437, 663
GlaI GCGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 564
Hin1II CATG 3 cut(s) 454, 470, 589
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 5 cut(s) 283, 382, 433, 443, 550
HphI GGTGA 2 cut(s) 317, 424
Hpy166II GTNNAC 3 cut(s) 51, 120, 311
Hpy188I TCNGA 3 cut(s) 87, 381, 463
Hpy188III TCNNGA 2 cut(s) 157, 287
Hpy8I GTNNAC 3 cut(s) 51, 120, 311
HpyAV CCTTC 1 cut(s) 602
HpyCH4III ACNGT 3 cut(s) 115, 124, 153
HpyCH4IV ACGT 2 cut(s) 609, 620
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 34, 93
HpySE526I ACGT 2 cut(s) 609, 620
Hsp92II CATG 3 cut(s) 454, 470, 589
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 67, 376, 463
LpnPI CCDG 5 cut(s) 264, 392, 432, 503, 656
LweI GCATC 2 cut(s) 52, 489
MaeI CTAG 4 cut(s) 105, 287, 437, 663
MaeII ACGT 2 cut(s) 609, 620
MaeIII GTNAC 3 cut(s) 576, 610, 649
MalI GATC 3 cut(s) 69, 378, 465
MboI GATC 3 cut(s) 67, 376, 463
MboII GAAGA 3 cut(s) 512, 538, 551
MfeI CAATTG 1 cut(s) 200
MluCI AATT 5 cut(s) 42, 194, 200, 338, 628
MlyI GAGTC 2 cut(s) 427, 559
MnlI CCTC 6 cut(s) 81, 101, 337, 403, 540, 580
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 2 cut(s) 26, 41
MslI CAYNNNNRTG 2 cut(s) 330, 647
MunI CAATTG 1 cut(s) 200
NdeII GATC 3 cut(s) 67, 376, 463
NlaIII CATG 3 cut(s) 454, 470, 589
NmuCI GTSAC 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 647
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 3 cut(s) 283, 382, 443
PleI GAGTC 2 cut(s) 427, 558
PpsI GAGTC 2 cut(s) 427, 558
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 2 cut(s) 330, 647
SaqAI TTAA 2 cut(s) 26, 41
Sau3AI GATC 3 cut(s) 67, 376, 463
SchI GAGTC 2 cut(s) 427, 559
SfaNI GCATC 2 cut(s) 52, 489
SfcI CTRYAG 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 330, 647
Sse9I AATT 5 cut(s) 42, 194, 200, 338, 628
SsiI CCGC 1 cut(s) 430
SspMI CTAG 4 cut(s) 105, 287, 437, 663
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 3 cut(s) 115, 124, 153
TaiI ACGT 2 cut(s) 612, 623
TaqI TCGA 1 cut(s) 183
TaqII GACCGA 1 cut(s) 307
TasI AATT 5 cut(s) 42, 194, 200, 338, 628
TfiI GAWTC 3 cut(s) 283, 382, 443
Tru1I TTAA 2 cut(s) 26, 41
Tru9I TTAA 2 cut(s) 26, 41
TscAI CASTG 2 cut(s) 118, 129
TseFI GTSAC 1 cut(s) 649
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 233, 467
TspRI CASTG 2 cut(s) 118, 129
XapI RAATTY 2 cut(s) 338, 628
XbaI TCTAGA 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 4 cut(s) 105, 287, 437, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.