Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0021898

Physical Location & Seq

Genomic Coordinates Forward (+)

3199328 .. 3202169

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1037200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTGCGGTGCATAGACGGGTTAAAGCATTTATGTGCTTCCTTCCTGAGTTGCTGTGATCTTGGCTTGTACAAACAATCGAGAGGCTTAGAAGACCCTGAAATTCTAGCAAGGGAGACAGTGTTCAGCGTAAGTGAAATAGAGGCACTTTACGAGCTATTTAAGAAGATCAGCAGTGCAGTGATTGATGACGGGTTGATTAACAAGGAGGAATTTCAACTGGCATTATTCAAGACAAACAAGAAAGAGAGCTTGTTTGCTGATCGTGTATTTGACTTATTCGACACAAAGCACAATGGAATACTAGGTTTTGAAGAGTTTGCTCGAGCTCTCTCTGTCTTTCATCCCAACGCCCCTATTGATGATAAGATTGAGTTTTCGTTTCAATTATATGATCTCAAGCAGCAAGGCTTCATTGAAAGGCAGGAGGTGAAGCAAATGGTTGTGGCTACTCTCGCAGAATCTGGCATGAATCTTTCAGATGACGTTATAGAGAGTATAATTGATAAGTACTTGACCTTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGACAAGGAAGAGTGGAGAAGCCTTGTTTTGCGGCACCCGTCCCTTCTTAAAAATATGACCCTCCAATACCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

211

Amino Acids

24.2

Weight (kDa)

4.97

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_5	PF13202	173 - 194	7.5e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16350 AT4G16350
malus_domestica	MD11G1037200.v1.1
pyrus_communis	pycom11g03090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	588
AciI	CCGC	2 cut(s)	7, 586
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	2 cut(s)	102, 212
AfaI	GTAC	2 cut(s)	71, 512
AgsI	TTSAA	5 cut(s)	218, 232, 314, 386, 419
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	157, 252, 329, 530
AluI	AGCT	4 cut(s)	157, 252, 329, 530
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	102, 212
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	588
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	107, 305
BisI	GCNGC	2 cut(s)	404, 587
BlsI	GCNGC	2 cut(s)	405, 588
BmcAI	AGTACT	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	383, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	5 cut(s)	58, 168, 262, 394, 552
BspACI	CCGC	2 cut(s)	7, 586
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	588
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	5 cut(s)	58, 168, 262, 394, 552
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	309, 558
BstAUI	TGTACA	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	47, 88
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	5 cut(s)	61, 171, 265, 397, 555
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	58, 168, 262, 394, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	2 cut(s)	181, 186
BtsIMutI	CAGTG	3 cut(s)	126, 181, 186
CaiI	CAGNNNCTG	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	70, 511
CviAII	CATG	2 cut(s)	469, 542
CviJI	RGCY	9 cut(s)	66, 87, 157, 252, 329, 411, 449, 530, 576
CviKI_1	RGCY	9 cut(s)	66, 87, 157, 252, 329, 411, 449, 530, 576
CviQI	GTAC	2 cut(s)	70, 511
DdeI	CTNAG	2 cut(s)	47, 88
DpnI	GATC	5 cut(s)	60, 170, 264, 396, 554
DpnII	GATC	5 cut(s)	58, 168, 262, 394, 552
Eam1104I	CTCTTC	2 cut(s)	309, 558
EarI	CTCTTC	2 cut(s)	309, 558
Ecl136II	GAGCTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	331
FaeI	CATG	2 cut(s)	472, 545
FaiI	YATR	9 cut(s)	14, 34, 391, 393, 470, 491, 500, 543, 611
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	2 cut(s)	468, 541
Fnu4HI	GCNGC	2 cut(s)	404, 587
FokI	GGATG	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	404, 587
FspBI	CTAG	2 cut(s)	107, 305
GluI	GCNGC	2 cut(s)	404, 587
Hin1II	CATG	2 cut(s)	472, 545
HinfI	GANTC	2 cut(s)	461, 472
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	3 cut(s)	46, 81, 232
HpyAV	CCTTC	2 cut(s)	52, 608
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	12, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	47, 88
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	2 cut(s)	472, 545
Kzo9I	GATC	5 cut(s)	58, 168, 262, 394, 552
LpnPI	CCDG	5 cut(s)	59, 111, 206, 410, 450
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	107, 305
MaeII	ACGT	1 cut(s)	486
MalI	GATC	5 cut(s)	60, 170, 264, 396, 554
MboI	GATC	5 cut(s)	58, 168, 262, 394, 552
MboII	GAAGA	4 cut(s)	104, 178, 326, 575
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	102, 212, 386, 501
MnlI	CCTC	7 cut(s)	77, 136, 202, 421, 517, 543, 626
MseI	TTAA	4 cut(s)	23, 162, 201, 603
MslI	CAYNNNNRTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	5 cut(s)	58, 168, 262, 394, 552
NlaIII	CATG	2 cut(s)	472, 545
NlaIV	GGNNCC	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	461, 472
PkrI	GCNGC	2 cut(s)	405, 588
Psp124BI	GAGCTC	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	590
PspXI	VCTCGAGB	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	71, 512
RsaNI	GTAC	2 cut(s)	70, 511
RseI	CAYNNNNRTG	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	4 cut(s)	23, 162, 201, 603
SatI	GCNGC	2 cut(s)	404, 587
Sau3AI	GATC	5 cut(s)	58, 168, 262, 394, 552
ScaI	AGTACT	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	9 cut(s)	159, 254, 310, 331, 432, 489, 521, 532, 627
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	3 cut(s)	324, 398, 626
SmoI	CTYRAG	3 cut(s)	324, 398, 626
Sse9I	AATT	4 cut(s)	102, 212, 386, 501
SsiI	CCGC	2 cut(s)	7, 586
SspMI	CTAG	2 cut(s)	107, 305
SstI	GAGCTC	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	4 cut(s)	80, 282, 325, 555
TasI	AATT	4 cut(s)	102, 212, 386, 501
TatI	WGTACW	2 cut(s)	69, 510
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	2 cut(s)	461, 472
Tru1I	TTAA	4 cut(s)	23, 162, 201, 603
Tru9I	TTAA	4 cut(s)	23, 162, 201, 603
TscAI	CASTG	3 cut(s)	126, 181, 186
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	332, 403, 485
TspRI	CASTG	3 cut(s)	126, 181, 186
XapI	RAATTY	2 cut(s)	102, 212
XhoI	CTCGAG	1 cut(s)	324
XspI	CTAG	2 cut(s)	107, 305
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.