Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021864

Physical Location & Seq

Genomic Coordinates Forward (+)

11475709 .. 11477837

Gene Structure 2129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAAGCGATCGTGATCTCGGAGCCAGGTAAGCCGGAGGTTCTGCAACTCCGTGATGTGGCAGACCCAGAAGTTAAAGACGATGAGGTTCTCATCAGAGTTCTCGCTACTGCTTTGAATCGTGCAGATACTCTCCAAAGACTTGGCCTTTATAATCCACCACCTGGCTCAAGCCCTTACCTTGGTCTCGAATGTTCTGGGACCATTGAATCCGTCGGTAAAGGCGTCTCTCGATGGAAAGTCGGAGACCAGGTGTGTGCTCTTCTTTCTGGAGGAGGTTATGCAGAGAAAGTTTCTGTTCCTGCTGGACAAATTTTCCCAATTCCCGCTGGTATCTCTCTAAAGGATGCAGCGGCTTTCCCTGAAGTGGCATGCACTGTTTGGTCTACTGTCTTCATGATGGGCCGTCTCTCTGTTGGTGAATCATTCTTGATTCATGGAGGTTCAAGTGGGATTGGGACATTTGCTATTCAGATAGCTAAACATCTGGGAGTGAGAGTATTTGTCACAGCTGGGAGTGATGAAAAGCTAGCTGCGTGCAAAGAACTCGGGGCTGATGTTTGTATAAATTACAAAACCGAGGATTTTGTTGCAAAGGTAAAAGCGGAAACCGATGGGAAAGGAGTGGATGTTATCTTGGACTGCATTGGGGCACCGTATTTGCAGAAAAATCTCGACAGCTTAAACTTTGATGGAAGGTTATGTATTATCGGTTTAATGGGAGGAGCCAATGCAGAAATAAAACTAAGTAGTCTGCTTCCAAAGCGTCTCACTGTCTTAGGAGCTGCATTAAGACCAAGAAGCCCTGAAAACAAAGCAGTTGTTGTAAGGGAAGTCGAGAAGAATGTCTGGCCAGCGATAGAAGCAGGGAAGGTAAAACCAGTGATTTACAAGTATTTACCATTGTCACAAGCAGCAGAAGGTCATAGCCTTATGGAGAGTAGCAACCATATTGGTAAGATTCTCCTTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

325

Amino Acids

34.46

Weight (kDa)

6.46

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	27 - 109	5e-16	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	151 - 260	1.1e-26	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	177 - 317	5.6e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580 AT4G21580
rosa_samantha	Rh3BG009900 Rh3DG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	652
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	3 cut(s)	327, 353, 605
AcoI	YGGCCR	1 cut(s)	851
AcsI	RAATTY	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	58, 164, 182, 367
AgsI	TTSAA	3 cut(s)	118, 209, 447
AjnI	CCWGG	3 cut(s)	25, 163, 249
AluBI	AGCT	6 cut(s)	479, 512, 529, 533, 681, 785
AluI	AGCT	6 cut(s)	479, 512, 529, 533, 681, 785
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	6 cut(s)	191, 232, 240, 413, 773, 965
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	145, 403, 851
ApeKI	GCWGC	4 cut(s)	350, 533, 785, 914
ApoI	RAATTY	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	201, 403
AsuHPI	GGTGA	1 cut(s)	431
AsuNHI	GCTAGC	1 cut(s)	529
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	655
BalI	TGGCCA	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	652
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	4 cut(s)	362, 520, 772, 926
BccI	CCATC	4 cut(s)	228, 394, 608, 686
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	3 cut(s)	27, 165, 251
BcoDI	GTCTC	6 cut(s)	191, 232, 240, 413, 773, 965
BfaI	CTAG	1 cut(s)	530
BisI	GCNGC	5 cut(s)	351, 354, 534, 786, 915
BlsI	GCNGC	5 cut(s)	352, 355, 535, 787, 916
Bme1390I	CCNGG	3 cut(s)	27, 165, 251
Bme18I	GGWCC	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	201, 403
BmiI	GGNNCC	4 cut(s)	24, 202, 654, 727
BmrFI	CCNGG	3 cut(s)	27, 165, 251
BmsI	GCATC	1 cut(s)	337
BmtI	GCTAGC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	2 cut(s)	191, 240
BsaJI	CCNNGG	2 cut(s)	181, 579
BsaXI	ACNNNNNCTCC	6 cut(s)	237, 267, 483, 513, 615, 645
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 164, 182, 367
Bse1I	ACTGG	1 cut(s)	881
Bse8I	GATNNNNATC	1 cut(s)	14
BseBI	CCWGG	3 cut(s)	27, 165, 251
BseDI	CCNNGG	2 cut(s)	181, 579
BseGI	GGATG	2 cut(s)	352, 634
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	4 cut(s)	58, 164, 182, 367
BseNI	ACTGG	1 cut(s)	881
BseRI	GAGGAG	2 cut(s)	288, 738
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	4 cut(s)	362, 520, 772, 926
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	147, 405, 853
BshNI	GGYRCC	1 cut(s)	652
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	214, 472
BslI	CCNNNNNNNGG	4 cut(s)	58, 164, 182, 367
BsmAI	GTCTC	6 cut(s)	191, 232, 240, 413, 773, 965
BsmBI	CGTCTC	3 cut(s)	232, 413, 773
BsmFI	GGGAC	2 cut(s)	214, 472
BsnI	GGCC	3 cut(s)	147, 405, 853
Bso31I	GGTCTC	2 cut(s)	191, 240
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	262, 655
Bsp143I	GATC	2 cut(s)	9, 15
BspACI	CCGC	3 cut(s)	327, 353, 605
BspANI	GGCC	3 cut(s)	147, 405, 853
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	4 cut(s)	24, 202, 654, 727
BspOI	GCTAGC	1 cut(s)	533
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	652
BspTNI	GGTCTC	2 cut(s)	191, 240
BsrI	ACTGG	1 cut(s)	881
BssECI	CCNNGG	2 cut(s)	181, 579
BssMI	GATC	2 cut(s)	9, 15
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	3 cut(s)	27, 165, 251
Bst4CI	ACNGT	4 cut(s)	379, 391, 657, 775
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	4 cut(s)	373, 531, 538, 855
BstDEI	CTNAG	2 cut(s)	746, 778
BstF5I	GGATG	2 cut(s)	352, 634
BstKTI	GATC	2 cut(s)	12, 18
BstMAI	GTCTC	6 cut(s)	191, 232, 240, 413, 773, 965
BstMBI	GATC	2 cut(s)	9, 15
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 763, 863
BstNI	CCWGG	3 cut(s)	27, 165, 251
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	3 cut(s)	25, 163, 249
BstSLI	GKGCMC	1 cut(s)	655
BstV1I	GCAGC	4 cut(s)	362, 520, 772, 926
BstV2I	GAAGAC	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	147, 405, 853
BtsCI	GGATG	2 cut(s)	352, 634
BtsIMutI	CAGTG	3 cut(s)	375, 771, 888
Cac8I	GCNNGC	4 cut(s)	373, 531, 538, 855
CciI	TCATGA	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	201, 403
CseI	GACGC	2 cut(s)	214, 755
CsiI	ACCWGGT	1 cut(s)	249
CviAII	CATG	3 cut(s)	372, 397, 437
DdeI	CTNAG	2 cut(s)	746, 778
DpnI	GATC	2 cut(s)	11, 17
DpnII	GATC	2 cut(s)	9, 15
EaeI	YGGCCR	1 cut(s)	851
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	181
Eco31I	GGTCTC	2 cut(s)	191, 240
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	548
EcoRII	CCWGG	3 cut(s)	25, 163, 249
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
Esp3I	CGTCTC	3 cut(s)	232, 413, 773
FaeI	CATG	3 cut(s)	375, 400, 440
FaqI	GGGAC	2 cut(s)	214, 472
FatI	CATG	3 cut(s)	371, 396, 436
FauI	CCCGC	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	5 cut(s)	351, 354, 534, 786, 915
FokI	GGATG	2 cut(s)	359, 641
Fsp4HI	GCNGC	5 cut(s)	351, 354, 534, 786, 915
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	5 cut(s)	351, 354, 534, 786, 915
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	147, 405, 853
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	2 cut(s)	214, 755
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	375, 400, 440
HinfI	GANTC	5 cut(s)	118, 209, 422, 433, 961
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	4 cut(s)	22, 98, 245, 474
Hpy188III	TCNNGA	8 cut(s)	13, 188, 231, 270, 397, 430, 674, 838
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	690, 865, 914
HpyCH4III	ACNGT	4 cut(s)	379, 391, 657, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 763, 863
HpyF3I	CTNAG	2 cut(s)	746, 778
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	375, 400, 440
Kzo9I	GATC	2 cut(s)	9, 15
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	22, 725, 782
Lsp1109I	GCAGC	4 cut(s)	362, 520, 772, 926
LweI	GCATC	1 cut(s)	337
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	505, 906
MalI	GATC	2 cut(s)	11, 17
MboI	GATC	2 cut(s)	9, 15
MboII	GAAGA	3 cut(s)	254, 385, 853
MhlI	GDGCHC	2 cut(s)	262, 655
MlsI	TGGCCA	1 cut(s)	853
MluCI	AATT	3 cut(s)	312, 321, 568
MluNI	TGGCCA	1 cut(s)	853
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	7 cut(s)	31, 79, 266, 269, 434, 574, 716
Mox20I	TGGCCA	1 cut(s)	853
MscI	TGGCCA	1 cut(s)	853
MseI	TTAA	4 cut(s)	75, 683, 716, 791
Msp20I	TGGCCA	1 cut(s)	853
MspA1I	CMGCKG	3 cut(s)	329, 353, 512
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	3 cut(s)	27, 165, 251
MvaI	CCWGG	3 cut(s)	27, 165, 251
MwoI	GCNNNNNNNGC	3 cut(s)	31, 763, 863
NdeII	GATC	2 cut(s)	9, 15
NheI	GCTAGC	1 cut(s)	529
NlaIII	CATG	3 cut(s)	375, 400, 440
NlaIV	GGNNCC	4 cut(s)	24, 202, 654, 727
NmuCI	GTSAC	2 cut(s)	505, 906
NspI	RCATGY	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	375
PagI	TCATGA	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	5 cut(s)	118, 209, 422, 433, 961
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	5 cut(s)	352, 355, 535, 787, 916
Ple19I	CGATCG	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	25, 163, 249
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	25, 163, 249
PspN4I	GGNNCC	4 cut(s)	24, 202, 654, 727
PspPI	GGNCC	2 cut(s)	201, 403
PvuI	CGATCG	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	75, 683, 716, 791
SatI	GCNGC	5 cut(s)	351, 354, 534, 786, 915
Sau3AI	GATC	2 cut(s)	9, 15
Sau96I	GGNCC	2 cut(s)	201, 403
ScrFI	CCNGG	3 cut(s)	27, 165, 251
SduI	GDGCHC	2 cut(s)	262, 655
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	169, 968
SmoI	CTYRAG	2 cut(s)	169, 968
SphI	GCATGC	1 cut(s)	375
Sse9I	AATT	3 cut(s)	312, 321, 568
SsiI	CCGC	3 cut(s)	327, 353, 605
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	3 cut(s)	25, 163, 249
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	4 cut(s)	379, 391, 657, 775
TaqI	TCGA	4 cut(s)	189, 232, 675, 837
TasI	AATT	3 cut(s)	312, 321, 568
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	5 cut(s)	118, 209, 422, 433, 961
Tru1I	TTAA	4 cut(s)	75, 683, 716, 791
Tru9I	TTAA	4 cut(s)	75, 683, 716, 791
TscAI	CASTG	3 cut(s)	382, 778, 888
TseFI	GTSAC	2 cut(s)	505, 906
TseI	GCWGC	4 cut(s)	350, 533, 785, 914
Tsp45I	GTSAC	2 cut(s)	505, 906
TspDTI	ATGAA	4 cut(s)	17, 385, 425, 537
TspGWI	ACGGA	2 cut(s)	41, 202
TspRI	CASTG	3 cut(s)	382, 778, 888
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	1 cut(s)	312
XceI	RCATGY	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.