Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013347

Physical Location & Seq

Genomic Coordinates Reverse (-)

11610808 .. 11612903

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATTTGCATTTGAAGAACTTATTTGGTAGGTTTCAGGAACAATTCGGGTCAGGTCCGGGTCTTGGACCTGGATCCGGTGTTTGCTTGATGATAGTTGAAGGTATATCTTCCAACATTATTCAATCTATATTTAGAGCTTCAGCTTCTTTATACAGTAGTGAGCCATGGAAGAGGCTCAGACCAGGTCATTTATTCGGTGTTCGGGTTGGCAAAGACTCAGATTGGTCGGGAAAGAGACAGCCTTTTCAATGTGTTCAGTTCATAGGAGGTGATGGTGGTGATATAGCAATCTATATGTATAGGTCCATGAGCTATGCACTGAAAATGACTGATGGTGATTCATGGGAAATGGCTAGAGATCCTAATGTTGAGGTCTTTAGAGTTACTTATGAGCTTGAGTCATTGATGCTTCCTTCTAACAAGAGGATGGTTAAGTCTTTGTCTTTAGAAGTTTCTGGAACTGATCGGTTTCCGATTATGGATGTTGCGCGGTGTATGACCTCTGGTGAGCTCCAGTTCAGAAGCCCGACACTTGAAGAGCTTAGGCTTGTGTTTGCTGTGATGAAAGCTCTCTCTTTGGTTCATCCTTTGCTGCTTCAAGAGGAGAAGCAAGTCAGGGGATTGCCAAGGATGATAAAGTTTTCACCTTTTATTGAGACTGTCGATGTTCAGTGGCCATCAGAGATGGGTAAAGGTCATGATTTTGTTGCTGTTACGGTCTCACATCCTCCAGGTCAATCATATGAACAGAAGCGCGAAGATGACGAGTTGGAAATAGTTTCAGGCATGACCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

266

Amino Acids

29.85

Weight (kDa)

5.8

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21890
fragaria_vesca	FvH4_3g02321
malus_domestica	MD05G1343800.v1.1 MD10G1319500.v1.1
prunus_persica	Prupe.4G023000_v2.0.a1
pyrus_communis	pycom05g31320 pycom10g27040
rosa_chinensis	RchiOBHm_Chr5g0003541
rosa_laevigata	RLG00000031150
rosa_multiflora	Rmu_co8496165.1_g000001 Rmu_sc0004279.1_g000009
rosa_roxburghii	Rroxscaffold_1G00072420
rosa_rugosa	Rorug04G0404000
rosa_samantha	Rh5AG031100 Rh5BG030200 Rh5CG033600 Rh5DG030800
rosa_wichuraiana	Rw5G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	493, 759
AciI	CCGC	2 cut(s)	493, 795
AclWI	GGATC	3 cut(s)	69, 82, 356
AcoI	YGGCCR	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	65, 77
AgsI	TTSAA	6 cut(s)	16, 101, 125, 251, 539, 602
AjnI	CCWGG	3 cut(s)	70, 184, 733
AluBI	AGCT	7 cut(s)	140, 146, 315, 397, 514, 544, 572
AluI	AGCT	7 cut(s)	140, 146, 315, 397, 514, 544, 572
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	3 cut(s)	232, 653, 727
AlwI	GGATC	3 cut(s)	69, 82, 356
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	1 cut(s)	595
AspLEI	GCGC	2 cut(s)	493, 759
AspS9I	GGNCC	3 cut(s)	56, 68, 306
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	284, 293, 350, 521, 639
AvaII	GGWCC	3 cut(s)	56, 68, 306
BalI	TGGCCA	1 cut(s)	679
BamHI	GGATCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	5 cut(s)	269, 329, 424, 682, 688
BciT130I	CCWGG	3 cut(s)	72, 186, 735
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	232, 653, 727
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	4 cut(s)	60, 72, 186, 735
Bme18I	GGWCC	3 cut(s)	56, 68, 306
BmgT120I	GGNCC	3 cut(s)	56, 68, 306
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	4 cut(s)	60, 72, 186, 735
BmsI	GCATC	1 cut(s)	399
BpmI	CTGGAG	2 cut(s)	500, 717
Bpu10I	CCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	727
BsaJI	CCNNGG	2 cut(s)	167, 629
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 77
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	72, 186, 735
BseDI	CCNNGG	2 cut(s)	167, 629
BseGI	GGATG	5 cut(s)	435, 490, 586, 639, 727
BseLI	CCNNNNNNNGG	2 cut(s)	65, 77
BseMII	CTCAG	2 cut(s)	193, 234
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	1 cut(s)	582
Bsh1236I	CGCG	2 cut(s)	493, 759
BshFI	GGCC	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	59, 78
BslI	CCNNNNNNNGG	2 cut(s)	65, 77
BsmAI	GTCTC	3 cut(s)	232, 653, 727
BsnI	GGCC	1 cut(s)	679
Bso31I	GGTCTC	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	74, 361, 466
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	2 cut(s)	493, 795
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	2 cut(s)	192, 233
BspFNI	CGCG	2 cut(s)	493, 759
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	3 cut(s)	69, 82, 356
BspQI	GCTCTTC	1 cut(s)	534
BspTNI	GGTCTC	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	2 cut(s)	167, 629
BssMI	GATC	3 cut(s)	74, 361, 466
BssT1I	CCWWGG	2 cut(s)	167, 629
Bst2UI	CCWGG	3 cut(s)	72, 186, 735
Bst4CI	ACNGT	3 cut(s)	158, 664, 721
Bst6I	CTCTTC	2 cut(s)	167, 534
BstDEI	CTNAG	3 cut(s)	179, 220, 545
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	5 cut(s)	435, 490, 586, 639, 727
BstFNI	CGCG	2 cut(s)	493, 759
BstHHI	GCGC	2 cut(s)	493, 759
BstKTI	GATC	3 cut(s)	77, 364, 469
BstMAI	GTCTC	3 cut(s)	232, 653, 727
BstMBI	GATC	3 cut(s)	74, 361, 466
BstNI	CCWGG	3 cut(s)	72, 186, 735
BstSCI	CCNGG	4 cut(s)	58, 70, 184, 733
BstUI	CGCG	2 cut(s)	493, 759
BstV1I	GCAGC	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	74, 361
BstYI	RGATCY	2 cut(s)	74, 361
BsuRI	GGCC	1 cut(s)	679
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	5 cut(s)	435, 490, 586, 639, 727
BtsIMutI	CAGTG	2 cut(s)	320, 680
CciI	TCATGA	1 cut(s)	700
CfoI	GCGC	2 cut(s)	493, 759
Cfr13I	GGNCC	3 cut(s)	56, 68, 306
CsiI	ACCWGGT	1 cut(s)	184
CviAII	CATG	6 cut(s)	168, 310, 345, 701, 790, 798
DdeI	CTNAG	3 cut(s)	179, 220, 545
DpnI	GATC	3 cut(s)	76, 363, 468
DpnII	GATC	3 cut(s)	74, 361, 466
EaeI	YGGCCR	1 cut(s)	677
Eam1104I	CTCTTC	2 cut(s)	167, 534
EarI	CTCTTC	2 cut(s)	167, 534
Ecl136II	GAGCTC	1 cut(s)	514
Eco130I	CCWWGG	2 cut(s)	167, 629
Eco24I	GRGCYC	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	727
Eco47I	GGWCC	3 cut(s)	56, 68, 306
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	514
EcoRII	CCWGG	3 cut(s)	70, 184, 733
EcoT14I	CCWWGG	2 cut(s)	167, 629
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	167, 629
FaeI	CATG	6 cut(s)	171, 313, 348, 704, 793, 801
FatI	CATG	6 cut(s)	167, 309, 344, 700, 789, 797
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	5 cut(s)	442, 497, 573, 646, 714
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	596
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	2 cut(s)	492, 758
GluI	GCNGC	1 cut(s)	596
GsuI	CTGGAG	2 cut(s)	500, 717
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	2 cut(s)	59, 78
HhaI	GCGC	2 cut(s)	493, 759
Hin1II	CATG	6 cut(s)	171, 313, 348, 704, 793, 801
Hin6I	GCGC	2 cut(s)	491, 757
HinP1I	GCGC	2 cut(s)	491, 757
HinfI	GANTC	3 cut(s)	218, 341, 401
HpaII	CCGG	2 cut(s)	59, 78
HphI	GGTGA	5 cut(s)	284, 293, 350, 521, 639
Hpy188I	TCNGA	5 cut(s)	182, 223, 477, 524, 685
Hpy188III	TCNNGA	5 cut(s)	38, 231, 459, 602, 701
HpyAV	CCTTC	2 cut(s)	95, 426
HpyCH4III	ACNGT	3 cut(s)	158, 664, 721
HpyCH4V	TGCA	2 cut(s)	10, 320
HpyF3I	CTNAG	3 cut(s)	179, 220, 545
Hsp92II	CATG	6 cut(s)	171, 313, 348, 704, 793, 801
HspAI	GCGC	2 cut(s)	491, 757
Kzo9I	GATC	3 cut(s)	74, 361, 466
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	1 cut(s)	582
LweI	GCATC	1 cut(s)	399
MabI	ACCWGGT	1 cut(s)	184
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	385, 715
MalI	GATC	3 cut(s)	76, 363, 468
MboI	GATC	3 cut(s)	74, 361, 466
MboII	GAAGA	5 cut(s)	28, 102, 184, 551, 773
MflI	RGATCY	2 cut(s)	74, 361
MhlI	GDGCHC	1 cut(s)	516
MlsI	TGGCCA	1 cut(s)	679
MluCI	AATT	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	679
MlyI	GAGTC	2 cut(s)	212, 410
MmeI	TCCRAC	2 cut(s)	138, 753
MnlI	CCTC	7 cut(s)	168, 263, 367, 420, 514, 598, 741
Mox20I	TGGCCA	1 cut(s)	679
MscI	TGGCCA	1 cut(s)	679
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	679
MspI	CCGG	2 cut(s)	59, 78
MspR9I	CCNGG	4 cut(s)	60, 72, 186, 735
MvaI	CCWGG	3 cut(s)	72, 186, 735
MvnI	CGCG	2 cut(s)	493, 759
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	74, 361, 466
NlaIII	CATG	6 cut(s)	171, 313, 348, 704, 793, 801
NlaIV	GGNNCC	1 cut(s)	76
PagI	TCATGA	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	341
PflFI	GACNNNGTC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	2 cut(s)	212, 409
PpsI	GAGTC	2 cut(s)	212, 409
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	3 cut(s)	70, 184, 733
PspGI	CCWGG	3 cut(s)	70, 184, 733
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	3 cut(s)	56, 68, 306
PsuI	RGATCY	2 cut(s)	74, 361
PsyI	GACNNNGTC	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	3 cut(s)	74, 361, 466
Sau96I	GGNCC	3 cut(s)	56, 68, 306
SchI	GAGTC	2 cut(s)	212, 410
ScrFI	CCNGG	4 cut(s)	60, 72, 186, 735
SduI	GDGCHC	1 cut(s)	516
SexAI	ACCWGGT	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	3 cut(s)	56, 68, 306
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	493, 795
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	4 cut(s)	58, 70, 184, 733
StyI	CCWWGG	2 cut(s)	167, 629
TaaI	ACNGT	3 cut(s)	158, 664, 721
TaqI	TCGA	1 cut(s)	666
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	327, 680
TseI	GCWGC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	253, 333, 575, 581, 762
TspRI	CASTG	2 cut(s)	327, 680
Tth111I	GACNNNGTC	1 cut(s)	186
VpaK11BI	GGWCC	3 cut(s)	56, 68, 306
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.