AT4G24320

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0022124
Physical Location & Seq
Reverse (-)
12601733 .. 12603494
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24320.1

Sequence Viewer

Length: 1188 bp
ATGGCAGCTGCAACAACAAAGCTAGCGAGAGCTCTGCAACAAAGACGCACCTTCGTAAACGCCAGAGTCAAATGGGTCAGTGACCATTACCTCGACGAAGCTGTTCAACGAGAGAAAAACCTAAAGCAAGTTATCTCTCTCAAGGATCGAATCGTATCATCTCCGTCGAAATCACTCCCTCTCTCTTCTCTTTCACTTCTCAAACCTCTCGTCAATCTTCACATAACCGCCGCCGCGTTTTTCCAGAAATACCCTTCTGTCTTCACCACTTTTCAGCCTTCTCCTTCTCATCCTCTCCATGTTCGTCTCACTCCCCAAGCTCTCACTCTCCACAAAGAAGAAGAGACGATTCATCTCTCGCCGCCTCAACGCAACGTCACTGTTCAACGGTTGACTAAATTCTTGATGCTAACGGGAGCTGGAAGTCTTCCTCTCTATGTCCTCGATCGTTTCAGGTTCGATTTGGGTCTCCCTCGCGATTACATTACTTCGTTGATCGGCGATTACCCGGAATACTTTGAAGTAACTGAGATCAAAGATCGGTTAACGGGTGAAAAGACGCTTGCTTTGACGATATCTTCGCGGCGGAACAACCTTCCTGTGTCGGAAATGGAGAGAAGAGAAGCCACCATTGATGGGTCTCGTGTGAAAAAAGGGTTGCGCATAAGGTATTCGATGAATTTCCCCAAAGGGTACGAATTGCATAAAAGGGTGAAGAATTGGGTGGAGCAATGGCAAAATCTCCCATACATTTCGCCTTATGAAAATGCTTTTCACTTGGGGTCGTACAGTGATCAGGCTGAGAAGTGGGCTGTCGCAGTACTTCATGAGCTTTTGTTCCTTTTAGTATCTAAGAAGACTGAGACAGACAATGTGATTTGCTTAGGGGAGTATTTAGGGTTCGGGATGAGGTTCAAGAAGGCTTTGGTGCACCACCCGGGTATATTTTACATGTCGCACAAGATTCGGACCCAGACTGTTGTTCTAAGGGAAGCTTACCACAAAGTTTTCTTGCTGGAGAAGCATCCATTGATGGGGATCAGACATCAGTACATTTATCTTATGAGCAAATCAGGGAGAGGGAAGAAACGAGACTATGTTCATGGAGTTGAGAGAAGCAACCGAAAAAAGAGAGTAATCAAAGCTTGTGAAGATGGTGAAATTTATGCACATAACAGCAGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

395

Amino Acids

45.69

Weight (kDa)

9.88

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 27 - 358 2.1e-109 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24320
malus_domestica MD15G1434200.v1.1
prunus_persica Prupe.1G577900_v2.0.a1
pyrus_communis pycom15g38340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 662
AccII CGCG 3 cut(s) 236, 477, 583
AciI CCGC 6 cut(s) 228, 231, 234, 362, 583, 586
AclWI GGATC 2 cut(s) 153, 1046
AcsI RAATTY 3 cut(s) 398, 679, 1161
AfaI GTAC 4 cut(s) 695, 788, 822, 1052
AfiI CCNNNNNNNGG 2 cut(s) 636, 1034
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 4 cut(s) 107, 386, 521, 916
AluBI AGCT 9 cut(s) 8, 22, 32, 101, 320, 419, 832, 995, 1145
AluI AGCT 9 cut(s) 8, 22, 32, 101, 320, 419, 832, 995, 1145
Alw21I GWGCWC 2 cut(s) 34, 933
Alw26I GTCTC 6 cut(s) 311, 338, 473, 645, 857, 1086
Alw44I GTGCAC 1 cut(s) 929
AlwI GGATC 2 cut(s) 153, 1046
Ama87I CYCGRG 1 cut(s) 937
ApaLI GTGCAC 1 cut(s) 929
ApeKI GCWGC 2 cut(s) 5, 8
ApoI RAATTY 3 cut(s) 398, 679, 1161
ArsI GACNNNNNNTTYG 6 cut(s) 195, 227, 550, 562, 582, 594
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 663
AspS9I GGNCC 1 cut(s) 969
AsuC2I CCSGG 3 cut(s) 509, 938, 939
AsuHPI GGTGA 4 cut(s) 256, 563, 724, 1169
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 937
AvaII GGWCC 1 cut(s) 969
BaeGI GKGCMC 1 cut(s) 933
BanII GRGCYC 1 cut(s) 34
BauI CACGAG 1 cut(s) 642
BbsI GAAGAC 3 cut(s) 253, 419, 863
Bbv12I GWGCWC 2 cut(s) 34, 933
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 629, 1027, 1148
BcgI CGANNNNNNTGC 4 cut(s) 16, 50, 947, 981
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 3 cut(s) 509, 938, 939
BcoDI GTCTC 6 cut(s) 311, 338, 473, 645, 857, 1086
BfaI CTAG 1 cut(s) 23
BisI GCNGC 6 cut(s) 6, 9, 231, 234, 362, 584
BlsI GCNGC 6 cut(s) 7, 10, 232, 235, 363, 585
BmcAI AGTACT 1 cut(s) 822
Bme1390I CCNGG 3 cut(s) 509, 938, 939
Bme18I GGWCC 1 cut(s) 969
BmeT110I CYCGRG 1 cut(s) 937
BmgT120I GGNCC 1 cut(s) 969
BmiI GGNNCC 1 cut(s) 971
BmrFI CCNGG 3 cut(s) 509, 938, 939
BmsI GCATC 2 cut(s) 396, 1033
BmtI GCTAGC 1 cut(s) 26
BpiI GAAGAC 3 cut(s) 253, 419, 863
BpmI CTGGAG 1 cut(s) 1037
Bpu10I CCTNAGC 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 3 cut(s) 509, 938, 939
BsaBI GATNNNNATC 1 cut(s) 1037
BsaI GGTCTC 2 cut(s) 473, 645
BsaJI CCNNGG 1 cut(s) 937
Bsc4I CCNNNNNNNGG 2 cut(s) 636, 1034
Bse3DI GCAATG 1 cut(s) 737
Bse8I GATNNNNATC 1 cut(s) 1037
BseDI CCNNGG 1 cut(s) 937
BseGI GGATG 3 cut(s) 289, 912, 1024
BseJI GATNNNNATC 1 cut(s) 1037
BseLI CCNNNNNNNGG 2 cut(s) 636, 1034
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 3 cut(s) 519, 792, 852
BseSI GKGCMC 1 cut(s) 933
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 3 cut(s) 236, 477, 583
Bsh1285I CGRYCG 1 cut(s) 448
BsiEI CGRYCG 1 cut(s) 448
BsiHKAI GWGCWC 2 cut(s) 34, 933
BsiHKCI CYCGRG 1 cut(s) 937
BsiSI CCGG 2 cut(s) 509, 938
BslI CCNNNNNNNGG 2 cut(s) 636, 1034
BsmAI GTCTC 6 cut(s) 311, 338, 473, 645, 857, 1086
BsmBI CGTCTC 2 cut(s) 311, 338
Bso31I GGTCTC 2 cut(s) 473, 645
BsoBI CYCGRG 1 cut(s) 937
Bsp1286I GDGCHC 2 cut(s) 34, 933
Bsp143I GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
Bsp68I TCGCGA 1 cut(s) 477
BspACI CCGC 6 cut(s) 228, 231, 234, 362, 583, 586
BspCNI CTCAG 3 cut(s) 520, 793, 853
BspFNI CGCG 3 cut(s) 236, 477, 583
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 971
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 153, 1046
BspTNI GGTCTC 2 cut(s) 473, 645
BsrDI GCAATG 1 cut(s) 737
BssECI CCNNGG 1 cut(s) 937
BssMI GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
BssSI CACGAG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 642
Bst4CI ACNGT 4 cut(s) 382, 390, 791, 979
Bst6I CTCTTC 3 cut(s) 190, 336, 613
BstC8I GCNNGC 2 cut(s) 24, 564
BstDEI CTNAG 6 cut(s) 528, 801, 852, 861, 883, 986
BstF5I GGATG 3 cut(s) 289, 912, 1024
BstFNI CGCG 3 cut(s) 236, 477, 583
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 7 cut(s) 148, 448, 498, 534, 541, 796, 1041
BstMAI GTCTC 6 cut(s) 311, 338, 473, 645, 857, 1086
BstMBI GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 1021
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 3 cut(s) 507, 936, 937
BstSLI GKGCMC 1 cut(s) 933
BstUI CGCG 3 cut(s) 236, 477, 583
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 3 cut(s) 253, 419, 863
BtsCI GGATG 3 cut(s) 289, 912, 1024
BtsIMutI CAGTG 3 cut(s) 85, 378, 796
BtuMI TCGCGA 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 24, 564
CciI TCATGA 1 cut(s) 826
CfoI GCGC 1 cut(s) 663
Cfr13I GGNCC 1 cut(s) 969
Cfr9I CCCGGG 1 cut(s) 937
CseI GACGC 2 cut(s) 54, 568
Csp6I GTAC 4 cut(s) 694, 787, 821, 1051
CviAII CATG 4 cut(s) 299, 827, 952, 1103
CviQI GTAC 4 cut(s) 694, 787, 821, 1051
DdeI CTNAG 6 cut(s) 528, 801, 852, 861, 883, 986
DpnI GATC 7 cut(s) 147, 447, 497, 533, 540, 795, 1040
DpnII GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
Eam1104I CTCTTC 3 cut(s) 190, 336, 613
EarI CTCTTC 3 cut(s) 190, 336, 613
EciI GGCGGA 1 cut(s) 601
Ecl136II GAGCTC 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 34
Eco31I GGTCTC 2 cut(s) 473, 645
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 969
Eco53kI GAGCTC 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 937
EcoICRI GAGCTC 1 cut(s) 32
EcoRV GATATC 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 34
Esp3I CGTCTC 2 cut(s) 311, 338
FaeI CATG 4 cut(s) 302, 830, 955, 1106
FalI AAGNNNNNCTT 2 cut(s) 979, 1011
FatI CATG 4 cut(s) 298, 826, 951, 1102
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 6 cut(s) 6, 9, 231, 234, 362, 584
FokI GGATG 3 cut(s) 276, 919, 1011
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 6 cut(s) 6, 9, 231, 234, 362, 584
FspBI CTAG 1 cut(s) 23
FspI TGCGCA 1 cut(s) 662
GlaI GCGC 1 cut(s) 662
GluI GCNGC 6 cut(s) 6, 9, 231, 234, 362, 584
GsuI CTGGAG 1 cut(s) 1037
HapII CCGG 2 cut(s) 509, 938
HgaI GACGC 2 cut(s) 54, 568
HhaI GCGC 1 cut(s) 663
Hin1II CATG 4 cut(s) 302, 830, 955, 1106
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HincII GTYRAC 2 cut(s) 393, 546
HindII GTYRAC 2 cut(s) 393, 546
HindIII AAGCTT 2 cut(s) 993, 1143
HinfI GANTC 4 cut(s) 66, 150, 349, 964
HpaI GTTAAC 1 cut(s) 546
HpaII CCGG 2 cut(s) 509, 938
HphI GGTGA 4 cut(s) 256, 563, 724, 1169
Hpy166II GTNNAC 4 cut(s) 58, 393, 546, 931
Hpy188I TCNGA 3 cut(s) 607, 969, 1043
Hpy188III TCNNGA 6 cut(s) 244, 403, 476, 827, 904, 916
Hpy8I GTNNAC 4 cut(s) 58, 393, 546, 931
Hpy99I CGWCG 2 cut(s) 98, 169
HpyAV CCTTC 6 cut(s) 61, 264, 288, 294, 605, 913
HpyCH4III ACNGT 4 cut(s) 382, 390, 791, 979
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 5 cut(s) 11, 37, 703, 931, 1169
HpyF10VI GCNNNNNNNGC 1 cut(s) 1021
HpyF3I CTNAG 6 cut(s) 528, 801, 852, 861, 883, 986
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 4 cut(s) 302, 830, 955, 1106
HspAI GCGC 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 793
KspAI GTTAAC 1 cut(s) 546
Kzo9I GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
LmnI GCTCC 2 cut(s) 416, 727
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 396, 1033
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 3 cut(s) 80, 376, 523
MalI GATC 7 cut(s) 147, 447, 497, 533, 540, 795, 1040
MboI GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
MhlI GDGCHC 2 cut(s) 34, 933
MluCI AATT 5 cut(s) 398, 679, 698, 718, 1161
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 585
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 2 cut(s) 509, 938
MspR9I CCNGG 3 cut(s) 509, 938, 939
MvnI CGCG 3 cut(s) 236, 477, 583
MwoI GCNNNNNNNGC 1 cut(s) 1021
NciI CCSGG 3 cut(s) 509, 938, 939
NdeII GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 4 cut(s) 302, 830, 955, 1106
NlaIV GGNNCC 1 cut(s) 971
NmuCI GTSAC 2 cut(s) 80, 376
NruI TCGCGA 1 cut(s) 477
NsbI TGCGCA 1 cut(s) 662
NspI RCATGY 1 cut(s) 955
PagI TCATGA 1 cut(s) 826
PciI ACATGT 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 3 cut(s) 150, 349, 964
PkrI GCNGC 6 cut(s) 7, 10, 232, 235, 363, 585
Ple19I CGATCG 1 cut(s) 448
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PscI ACATGT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 971
PspPI GGNCC 1 cut(s) 969
PsrI GAACNNNNNNTAC 2 cut(s) 884, 916
PvuI CGATCG 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 8
RruI TCGCGA 1 cut(s) 477
RsaI GTAC 4 cut(s) 695, 788, 822, 1052
RsaNI GTAC 4 cut(s) 694, 787, 821, 1051
SacI GAGCTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 6 cut(s) 6, 9, 231, 234, 362, 584
Sau3AI GATC 7 cut(s) 145, 445, 495, 531, 538, 793, 1038
Sau96I GGNCC 1 cut(s) 969
ScaI AGTACT 1 cut(s) 822
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 3 cut(s) 509, 938, 939
SduI GDGCHC 2 cut(s) 34, 933
SfaNI GCATC 2 cut(s) 396, 1033
SinI GGWCC 1 cut(s) 969
SmaI CCCGGG 1 cut(s) 939
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 5 cut(s) 398, 679, 698, 718, 1161
SsiI CCGC 6 cut(s) 228, 231, 234, 362, 583, 586
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 3 cut(s) 507, 936, 937
TaaI ACNGT 4 cut(s) 382, 390, 791, 979
TaiI ACGT 1 cut(s) 378
TaqI TCGA 6 cut(s) 93, 148, 167, 444, 459, 674
TasI AATT 5 cut(s) 398, 679, 698, 718, 1161
TatI WGTACW 2 cut(s) 820, 1050
TauI GCSGC 4 cut(s) 233, 236, 364, 586
TfiI GAWTC 3 cut(s) 150, 349, 964
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 3 cut(s) 85, 385, 796
TseFI GTSAC 2 cut(s) 80, 376
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 2 cut(s) 80, 376
TspDTI ATGAA 5 cut(s) 341, 692, 777, 815, 1091
TspGWI ACGGA 1 cut(s) 153
TspMI CCCGGG 1 cut(s) 937
TspRI CASTG 3 cut(s) 85, 385, 796
VneI GTGCAC 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 969
XapI RAATTY 3 cut(s) 398, 679, 1161
XceI RCATGY 1 cut(s) 955
XmaI CCCGGG 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.