Prupe.1G577900_v2.0.a1

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022124
Physical Location & Seq
Reverse (-)
47040129 .. 47041857
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G577900.1

Sequence Viewer

Length: 1125 bp
ATGGCTTTGCCTCTGATTAGGTTGCTTCCCCACCGGTTCAACACCATCAGGGCCTTTGTAAACGCCAAGGTAAAATGGGTCAGAGATCCATACTTGGACTACGCAGTTGAAAGAGAGAAAGACCTTAAACAAGTCATTTCCTTCAAGAACCAAATCATCTCCAACCCTTCCAAGTCCCTCCCTCTCTCTGCAGCCTCTTTGCTCAAACCCCACCTCAACCTCCCTATCACATCCTCCAAATTCTTCCAGAAATACCCCTCGTTCTTCTCTGTATTCCAGCCCTCCCCTGGTCTCCCGCCCCATGTCAAGCTCACTCCACAGACCCTCTTGCTCCACAAAAAGGAGTCAACCATTCATACCTCCATGTCTAACAAATACAACGCCACTAAGCGACTTGCTAAGCTTTTGATGCTCGCCGGAGTGACCAAATTGCCCATGCACCTGATTAACAGGTTGAAATGGGATCTGGGTCTTCCTCATGATATTGTGGGTACCCTTCTTGCTGATTTTCCTGACTACTTCGAGGCTTGTGAAGTTGGGGATGCGGTAACTGGTAAAGTAGAGATTGCTTTGGGTCTTGTCTGTTGGAGAAAGGAGCTTGCTTTCTCTCAATTGGAAAGAAGGCCAATAATGGTCTGTGCCTCGAATGCAAAATTATCGAAGCACATTGGGTTTCCAATGAATTTTCCCAAGGGGTTTGATTTGGAAAATAGGGTGAAGGATTGGGTTGAGGAATGGCAGGCATTGCCATACATTTCGCCATATGAAAATGCAACCCATCTTTCACCAAATAGCGATCAGGCGGAGAAGTGGATGGTGGCAATGCTTCATGAGGTTCTTTGTCTTATGATTTCCAAGAAGACAGAGAGGGAAAATTTGTTTGTTTTGGGAGAGTATTTGGGGTTCGAAAGGTCGAGGTTAAAAAAGGCTGTGGTGCATCACCCAGGAATCTTCTATGTTTCAAATAAAATTAGGACACAAACTGTGGTCCTAAGGGAGGCATATAGGAAGGACTTCTTGATTGAGAAGCACCCATTAATGGGTATGCGGTATCGATACATTCACCTAATGAATAAGATGCAAAGAAGGGATGAAGCGACTCTTGTTTCGCCTTCTGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

375

Amino Acids

43.04

Weight (kDa)

9.69

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24320
malus_domestica MD15G1434200.v1.1
prunus_persica Prupe.1G577900_v2.0.a1
pyrus_communis pycom15g38340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 491
AciI CCGC 4 cut(s) 296, 545, 803, 1048
AclWI GGATC 2 cut(s) 80, 471
AcsI RAATTY 3 cut(s) 239, 682, 874
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 6 cut(s) 287, 340, 997, 1039, 1040, 1118
AgeI ACCGGT 1 cut(s) 33
AgsI TTSAA 5 cut(s) 40, 110, 145, 457, 963
AjnI CCWGG 2 cut(s) 286, 943
AluBI AGCT 3 cut(s) 310, 403, 598
AluI AGCT 3 cut(s) 310, 403, 598
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 80, 471
AoxI GGCC 2 cut(s) 51, 623
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 3 cut(s) 239, 682, 874
ArsI GACNNNNNNTTYG 2 cut(s) 1090, 1122
AseI ATTAAT 1 cut(s) 1037
AsiGI ACCGGT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 1013
Asp718I GGTACC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 51, 988
AsuHPI GGTGA 4 cut(s) 727, 777, 932, 1055
AsuII TTCGAA 1 cut(s) 906
AvaII GGWCC 1 cut(s) 988
AxyI CCTNAGG 1 cut(s) 992
BanI GGYRCC 1 cut(s) 491
BbsI GAAGAC 2 cut(s) 464, 866
BbvI GCAGC 1 cut(s) 203
BccI CCATC 3 cut(s) 53, 786, 808
BcgI CGANNNNNNTGC 2 cut(s) 639, 673
BciT130I CCWGG 2 cut(s) 288, 945
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 192
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 288, 945
Bme18I GGWCC 1 cut(s) 988
BmgT120I GGNCC 2 cut(s) 51, 988
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 2 cut(s) 288, 945
BmsI GCATC 4 cut(s) 399, 532, 946, 1068
BpiI GAAGAC 2 cut(s) 464, 866
Bpu1102I GCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 906
Bsa29I ATCGAT 1 cut(s) 1054
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 4 cut(s) 66, 286, 690, 943
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 6 cut(s) 287, 340, 997, 1039, 1040, 1118
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 556
Bse21I CCTNAGG 1 cut(s) 992
Bse3DI GCAATG 2 cut(s) 743, 828
BseBI CCWGG 2 cut(s) 288, 945
BseCI ATCGAT 1 cut(s) 1054
BseDI CCNNGG 4 cut(s) 66, 286, 690, 943
BseGI GGATG 4 cut(s) 230, 547, 819, 1096
BseLI CCNNNNNNNGG 6 cut(s) 287, 340, 997, 1039, 1040, 1118
BseMI GCAATG 2 cut(s) 743, 828
BseNI ACTGG 1 cut(s) 556
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 2 cut(s) 53, 625
BshNI GGYRCC 1 cut(s) 491
BshTI ACCGGT 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 1054
BsiSI CCGG 2 cut(s) 34, 417
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 6 cut(s) 287, 340, 997, 1039, 1040, 1118
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 2 cut(s) 53, 625
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 906
Bsp143I GATC 3 cut(s) 85, 463, 796
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 4 cut(s) 296, 545, 803, 1048
BspANI GGCC 2 cut(s) 53, 625
BspDI ATCGAT 1 cut(s) 1054
BspHI TCATGA 2 cut(s) 478, 829
BspLI GGNNCC 1 cut(s) 493
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 2 cut(s) 80, 471
BspT104I TTCGAA 1 cut(s) 906
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 743, 828
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 4 cut(s) 66, 286, 690, 943
BssMI GATC 3 cut(s) 85, 463, 796
BssT1I CCWWGG 2 cut(s) 66, 690
Bst2UI CCWGG 2 cut(s) 288, 945
Bst4CI ACNGT 1 cut(s) 985
BstAPI GCANNNNNTGC 1 cut(s) 745
BstBI TTCGAA 1 cut(s) 906
BstC8I GCNNGC 3 cut(s) 414, 600, 741
BstDEI CTNAG 3 cut(s) 387, 399, 992
BstENI CCTNNNNNAGG 1 cut(s) 995
BstF5I GGATG 4 cut(s) 230, 547, 819, 1096
BstKTI GATC 3 cut(s) 88, 466, 799
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 85, 463, 796
BstMWI GCNNNNNNNGC 3 cut(s) 409, 647, 745
BstNI CCWGG 2 cut(s) 288, 945
BstSCI CCNGG 2 cut(s) 286, 943
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 2 cut(s) 464, 866
BstX2I RGATCY 2 cut(s) 85, 463
BstYI RGATCY 2 cut(s) 85, 463
Bsu15I ATCGAT 1 cut(s) 1054
Bsu36I CCTNAGG 1 cut(s) 992
BsuRI GGCC 2 cut(s) 53, 625
BsuTUI ATCGAT 1 cut(s) 1054
BtsCI GGATG 4 cut(s) 230, 547, 819, 1096
Cac8I GCNNGC 3 cut(s) 414, 600, 741
CciI TCATGA 2 cut(s) 478, 829
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 51, 988
ClaI ATCGAT 1 cut(s) 1054
Csp6I GTAC 1 cut(s) 492
CspAI ACCGGT 1 cut(s) 33
CviAII CATG 5 cut(s) 302, 364, 436, 479, 830
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 3 cut(s) 387, 399, 992
DpnI GATC 3 cut(s) 87, 465, 798
DpnII GATC 3 cut(s) 85, 463, 796
EciI GGCGGA 1 cut(s) 818
Eco130I CCWWGG 2 cut(s) 66, 690
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 988
Eco81I CCTNAGG 1 cut(s) 992
EcoNI CCTNNNNNAGG 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 286, 943
EcoT14I CCWWGG 2 cut(s) 66, 690
ErhI CCWWGG 2 cut(s) 66, 690
FaeI CATG 5 cut(s) 305, 367, 439, 482, 833
FalI AAGNNNNNCTT 4 cut(s) 1001, 1033, 1086, 1118
FaqI GGGAC 1 cut(s) 160
FatI CATG 5 cut(s) 301, 363, 435, 478, 829
FauI CCCGC 1 cut(s) 303
FauNDI CATATG 1 cut(s) 763
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 4 cut(s) 217, 554, 826, 1103
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 2 cut(s) 53, 625
HapII CCGG 2 cut(s) 34, 417
Hin1II CATG 5 cut(s) 305, 367, 439, 482, 833
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 3 cut(s) 344, 948, 1099
HpaII CCGG 2 cut(s) 34, 417
HphI GGTGA 4 cut(s) 727, 777, 932, 1055
Hpy166II GTNNAC 2 cut(s) 61, 348
Hpy188I TCNGA 2 cut(s) 15, 83
Hpy188III TCNNGA 6 cut(s) 145, 247, 479, 512, 830, 1018
Hpy8I GTNNAC 2 cut(s) 61, 348
HpyAV CCTTC 8 cut(s) 151, 177, 506, 615, 712, 1003, 1080, 1122
HpyCH4III ACNGT 1 cut(s) 985
HpyCH4V TGCA 6 cut(s) 191, 439, 650, 773, 937, 1081
HpyF10VI GCNNNNNNNGC 3 cut(s) 409, 647, 745
HpyF3I CTNAG 3 cut(s) 387, 399, 992
Hsp92II CATG 5 cut(s) 305, 367, 439, 482, 833
KpnI GGTACC 1 cut(s) 495
Kzo9I GATC 3 cut(s) 85, 463, 796
LmnI GCTCC 2 cut(s) 336, 595
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 4 cut(s) 399, 532, 946, 1068
MaeIII GTNAC 2 cut(s) 421, 547
MalI GATC 3 cut(s) 87, 465, 798
MboI GATC 3 cut(s) 85, 463, 796
MboII GAAGA 5 cut(s) 235, 256, 464, 871, 943
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 2 cut(s) 85, 463
MluCI AATT 7 cut(s) 239, 428, 611, 653, 682, 874, 969
MlyI GAGTC 2 cut(s) 353, 1093
MmeI TCCRAC 2 cut(s) 186, 566
MroXI GAANNNNTTC 1 cut(s) 1013
MseI TTAA 4 cut(s) 126, 447, 920, 1037
MspI CCGG 2 cut(s) 34, 417
MspR9I CCNGG 2 cut(s) 288, 945
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 2 cut(s) 288, 945
MwoI GCNNNNNNNGC 3 cut(s) 409, 647, 745
NdeI CATATG 1 cut(s) 763
NdeII GATC 3 cut(s) 85, 463, 796
NlaIII CATG 5 cut(s) 305, 367, 439, 482, 833
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 421
NspV TTCGAA 1 cut(s) 906
PagI TCATGA 2 cut(s) 478, 829
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 1013
PfeI GAWTC 1 cut(s) 948
PinAI ACCGGT 1 cut(s) 33
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 2 cut(s) 352, 1093
PpsI GAGTC 2 cut(s) 352, 1093
PshBI ATTAAT 1 cut(s) 1037
Psp6I CCWGG 2 cut(s) 286, 943
PspGI CCWGG 2 cut(s) 286, 943
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 2 cut(s) 51, 988
PsrI GAACNNNNNNTAC 2 cut(s) 887, 919
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 85, 463
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SaqAI TTAA 4 cut(s) 126, 447, 920, 1037
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 3 cut(s) 85, 463, 796
Sau96I GGNCC 2 cut(s) 51, 988
SchI GAGTC 2 cut(s) 353, 1093
ScrFI CCNGG 2 cut(s) 288, 945
SfaNI GCATC 4 cut(s) 399, 532, 946, 1068
SfcI CTRYAG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 906
SinI GGWCC 1 cut(s) 988
Sse9I AATT 7 cut(s) 239, 428, 611, 653, 682, 874, 969
SsiI CCGC 4 cut(s) 296, 545, 803, 1048
StyD4I CCNGG 2 cut(s) 286, 943
StyI CCWWGG 2 cut(s) 66, 690
TaaI ACNGT 1 cut(s) 985
TaqI TCGA 6 cut(s) 522, 644, 659, 906, 914, 1054
TasI AATT 7 cut(s) 239, 428, 611, 653, 682, 874, 969
TfiI GAWTC 1 cut(s) 948
Tru1I TTAA 4 cut(s) 126, 447, 920, 1037
Tru9I TTAA 4 cut(s) 126, 447, 920, 1037
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 6 cut(s) 344, 695, 780, 818, 1085, 1107
VpaK11BI GGWCC 1 cut(s) 988
VspI ATTAAT 1 cut(s) 1037
XagI CCTNNNNNAGG 1 cut(s) 995
XapI RAATTY 3 cut(s) 239, 682, 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.