Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020157

Physical Location & Seq

Genomic Coordinates Reverse (-)

14831005 .. 14831550

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACTATAACTCGAGGGGACTTCAAGCTGAGATTGAACCAAGGAGAATTCACGGATTCTCAGATTATAGTTATGTTGGGAGAGAATGGAACGGGGAAGACAACGTTTATCAAAATGCTTGCGGGTTCGAAGCTTGATATTGATGAAGAAGGATCTCAAGTACATGAGATACCACAGTTCTCTGTTTCTTACAAGAATCAACATATGTCAAACCGTAAATTTGAGATTACTGTTAGAGATTTGATACACAGGAAGATCCCTAACGCATATGCAGAACACCAATTCGTGTCAGACGTTATGAAACCGCTCAAGATCGAGGAGCTCATGGATAAAAGCTTCAACAAACTATCAGGTGGAGAGAAACAAAGGGTTGCTTTAGCTTTATGCCTTGGTAAATCTGCGGATATCTACTTGATCGATGAACCGAGCGCGTTTCTTGATTCGGAGCAGAGAATTATAGCTTCCAAAGTCATAAAGAGATTCATTCTTCAGATGAAGAAGGCGGCTTTTGCACGATTTCATAATGGCTACGTATTTGGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0003674 GO:0005215 GO:0005488 GO:0005506 GO:0005524 GO:0006403 GO:0006405 GO:0006412 GO:0006413 GO:0006415 GO:0006518 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017076 GO:0019538 GO:0022411 GO:0022613 GO:0030554 GO:0031503 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0033036 GO:0033750 GO:0034613 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043021 GO:0043024 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044877 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran Fer4 RLI

Protein Analysis

181

Amino Acids

20.63

Weight (kDa)

9.28

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	17 - 143	5.1e-19	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13640 AT4G30300
malus_domestica	MD09G1160000.v1.1
prunus_persica	Prupe.3G017900_v2.0.a1 Prupe.3G018700_v2.0.a1 Prupe.3G018700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	307
AccII	CGCG	1 cut(s)	431
AciI	CCGC	4 cut(s)	122, 305, 401, 503
AclI	AACGTT	1 cut(s)	104
AclWI	GGATC	2 cut(s)	160, 250
AcsI	RAATTY	2 cut(s)	47, 218
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	25, 37, 340
AluBI	AGCT	6 cut(s)	28, 133, 322, 336, 380, 461
AluI	AGCT	6 cut(s)	28, 133, 322, 336, 380, 461
Alw21I	GWGCWC	1 cut(s)	324
AlwI	GGATC	2 cut(s)	160, 250
Ama87I	CYCGRG	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	47, 218
AspLEI	GCGC	1 cut(s)	431
AsuII	TTCGAA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	12
BaeI	ACNNNNGTAYC	2 cut(s)	161, 194
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	324
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	141, 293
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	40, 388
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	40, 388
BseMII	CTCAG	2 cut(s)	20, 74
BseRI	GAGGAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	431
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	12
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	152, 255, 312, 414
BspACI	CCGC	4 cut(s)	122, 305, 401, 503
BspCNI	CTCAG	2 cut(s)	21, 73
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	431
BspPI	GGATC	2 cut(s)	160, 250
BspT104I	TTCGAA	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	40, 388
BssMI	GATC	4 cut(s)	152, 255, 312, 414
BssT1I	CCWWGG	2 cut(s)	40, 388
Bst4CI	ACNGT	3 cut(s)	177, 215, 232
BstBAI	YACGTR	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	29, 60
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	4 cut(s)	155, 258, 315, 417
BstMBI	GATC	4 cut(s)	152, 255, 312, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstSNI	TACGTA	1 cut(s)	532
BstUI	CGCG	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	152, 255
BstYI	RGATCY	2 cut(s)	152, 255
Bsu15I	ATCGAT	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	431
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	164, 325
CviJI	RGCY	8 cut(s)	28, 133, 322, 336, 380, 461, 506, 528
CviKI_1	RGCY	8 cut(s)	28, 133, 322, 336, 380, 461, 506, 528
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	29, 60
DpnI	GATC	4 cut(s)	154, 257, 314, 416
DpnII	GATC	4 cut(s)	152, 255, 312, 414
Ecl136II	GAGCTC	1 cut(s)	322
Eco105I	TACGTA	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	40, 388
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	40, 388
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	40, 388
FaeI	CATG	2 cut(s)	167, 328
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	163, 324
FauI	CCCGC	1 cut(s)	115
FauNDI	CATATG	2 cut(s)	204, 268
Fnu4HI	GCNGC	1 cut(s)	504
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	504
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	1 cut(s)	504
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	167, 328
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HindIII	AAGCTT	2 cut(s)	131, 334
HinfI	GANTC	4 cut(s)	56, 196, 440, 480
Hpy188I	TCNGA	4 cut(s)	63, 292, 445, 492
Hpy188III	TCNNGA	2 cut(s)	310, 437
HpyAV	CCTTC	2 cut(s)	143, 493
HpyCH4III	ACNGT	3 cut(s)	177, 215, 232
HpyCH4IV	ACGT	3 cut(s)	104, 294, 531
HpyCH4V	TGCA	2 cut(s)	272, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	29, 60
HpySE526I	ACGT	3 cut(s)	104, 294, 531
Hsp92II	CATG	2 cut(s)	167, 328
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	152, 255, 312, 414
LmnI	GCTCC	2 cut(s)	319, 445
LpnPI	CCDG	2 cut(s)	235, 336
MaeII	ACGT	3 cut(s)	104, 294, 531
MalI	GATC	4 cut(s)	154, 257, 314, 416
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	4 cut(s)	152, 255, 312, 414
MboII	GAAGA	5 cut(s)	109, 158, 265, 479, 508
MflI	RGATCY	2 cut(s)	152, 255
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	47, 218, 281, 453
MnlI	CCTC	2 cut(s)	8, 310
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeI	CATATG	2 cut(s)	204, 268
NdeII	GATC	4 cut(s)	152, 255, 312, 414
NlaIII	CATG	2 cut(s)	167, 328
NspV	TTCGAA	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	56, 196, 440, 480
PkrI	GCNGC	1 cut(s)	505
Ppu21I	YACGTR	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	104
PspXI	VCTCGAGB	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	152, 255
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	324
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	4 cut(s)	152, 255, 312, 414
SduI	GDGCHC	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	12
SmlI	CTYRAG	3 cut(s)	12, 156, 308
SmoI	CTYRAG	3 cut(s)	12, 156, 308
SnaBI	TACGTA	1 cut(s)	532
Sse9I	AATT	4 cut(s)	47, 218, 281, 453
SsiI	CCGC	4 cut(s)	122, 305, 401, 503
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	2 cut(s)	40, 388
TaaI	ACNGT	3 cut(s)	177, 215, 232
TaiI	ACGT	3 cut(s)	107, 297, 534
TaqI	TCGA	4 cut(s)	13, 128, 315, 417
TasI	AATT	4 cut(s)	47, 218, 281, 453
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	4 cut(s)	56, 196, 440, 480
TspDTI	ATGAA	6 cut(s)	159, 314, 435, 472, 509, 509
TspGWI	ACGGA	1 cut(s)	68
XapI	RAATTY	2 cut(s)	47, 218
XhoI	CTCGAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.