AT4G34139

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0022089
Physical Location & Seq
Forward (+)
16348104 .. 16349118
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34139.1

Sequence Viewer

Length: 615 bp
ATGGCTCAAGAACCTAACTTCACATTCACTTACCAATACTACAAACTAAAAGATCATCCATTTTTAACTAACGTAAGCTCTTCCATCAACCTATCTACCTCTAGATCTGAAGATCCTCCTTCTTTCACCGCATTTTTCGCCATTTCTGCTAACTCCTTGGCCCGTTTCCTCCTCTCTTCTCCAACCATCACTTCCCTCACCGCTCCCTCCACTTTCTCTCTGCTAATGAAGTCTCCAACTACTTGCATCATCTTCTTCACTCCCACACTCACTCCTAACTGCTCGGCTCCCACGGGCCATGTCACCATTGGCAGGCCCGCTGCCACCCCTTCTAATAACGAGTTCCATCCACAATGCGTCAAAAATCCGCCAATTGCTTTGTGCTCAAGTATCAGCACTTGTGGCGCCCACCCTCGGATTATCAATCCTTTTCCCTTGGTCTTCTCTTCAAACCCCTCTGAGGATTTTGCTGCAAAGAGAGTGATGTCTATGGTACCTTGGCTGCCTTTTCTGTTAACCACCCAGACAAAATCATGTCCTGACATATCTAAACCAGCTGCAATCTCTATCAGCTGCTCGTTTTTAAAGCTAGACATGGTTCCAAAGGCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.16

Weight (kDa)

8.91

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34139
pyrus_communis pycom02g12090 pycom02g12130
rosa_roxburghii Rroxscaffold_3G00231750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 2 cut(s) 404, 493
AccBSI CCGCTC 1 cut(s) 203
AciI CCGC 4 cut(s) 129, 201, 318, 368
AclWI GGATC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 3 cut(s) 312, 414, 460
AgsI TTSAA 1 cut(s) 450
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 4 cut(s) 78, 557, 573, 589
AluI AGCT 4 cut(s) 78, 557, 573, 589
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 107
AoxI GGCC 4 cut(s) 159, 295, 314, 606
ApeKI GCWGC 5 cut(s) 320, 470, 502, 557, 573
Asp718I GGTACC 1 cut(s) 493
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 3 cut(s) 160, 295, 315
AsuHPI GGTGA 3 cut(s) 118, 190, 295
BanI GGYRCC 2 cut(s) 404, 493
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 5 cut(s) 307, 457, 489, 544, 560
BccI CCATC 3 cut(s) 92, 194, 354
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 2 cut(s) 102, 590
BfoI RGCGCY 1 cut(s) 408
BglII AGATCT 1 cut(s) 104
BisI GCNGC 5 cut(s) 321, 471, 503, 558, 574
BlsI GCNGC 5 cut(s) 322, 472, 504, 559, 575
BmgT120I GGNCC 3 cut(s) 160, 295, 315
BmiI GGNNCC 4 cut(s) 288, 406, 495, 600
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 5 cut(s) 156, 291, 413, 435, 497
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 414, 460
BseDI CCNNGG 5 cut(s) 156, 291, 413, 435, 497
BseGI GGATG 2 cut(s) 55, 346
BseLI CCNNNNNNNGG 3 cut(s) 312, 414, 460
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 5 cut(s) 307, 457, 489, 544, 560
BshFI GGCC 4 cut(s) 161, 297, 316, 608
BshNI GGYRCC 2 cut(s) 404, 493
BsiHKAI GWGCWC 1 cut(s) 386
BslI CCNNNNNNNGG 3 cut(s) 312, 414, 460
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 4 cut(s) 161, 297, 316, 608
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 52, 104, 112
BspACI CCGC 4 cut(s) 129, 201, 318, 368
BspANI GGCC 4 cut(s) 161, 297, 316, 608
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 4 cut(s) 288, 406, 495, 600
BspPI GGATC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 85
BspT107I GGYRCC 2 cut(s) 404, 493
BsrBI CCGCTC 1 cut(s) 203
BssECI CCNNGG 5 cut(s) 156, 291, 413, 435, 497
BssMI GATC 3 cut(s) 52, 104, 112
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 3 cut(s) 156, 435, 497
Bst6I CTCTTC 3 cut(s) 85, 181, 451
BstACI GRCGYC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 314, 318
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 55, 346
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 3 cut(s) 55, 107, 115
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 52, 104, 112
BstMWI GCNNNNNNNGC 3 cut(s) 137, 146, 402
BstV1I GCAGC 5 cut(s) 307, 457, 489, 544, 560
BstV2I GAAGAC 1 cut(s) 433
BstX2I RGATCY 2 cut(s) 104, 112
BstYI RGATCY 2 cut(s) 104, 112
BsuRI GGCC 4 cut(s) 161, 297, 316, 608
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 55, 346
Cac8I GCNNGC 2 cut(s) 314, 318
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 3 cut(s) 160, 295, 315
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 494
CviAII CATG 4 cut(s) 299, 534, 595, 610
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 1 cut(s) 459
DinI GGCGCC 1 cut(s) 406
DpnI GATC 3 cut(s) 54, 106, 114
DpnII GATC 3 cut(s) 52, 104, 112
DraI TTTAAA 1 cut(s) 585
Eam1104I CTCTTC 3 cut(s) 85, 181, 451
EarI CTCTTC 3 cut(s) 85, 181, 451
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 3 cut(s) 156, 435, 497
Eco57I CTGAAG 1 cut(s) 129
EcoT14I CCWWGG 3 cut(s) 156, 435, 497
EgeI GGCGCC 1 cut(s) 406
EheI GGCGCC 1 cut(s) 406
ErhI CCWWGG 3 cut(s) 156, 435, 497
FaeI CATG 4 cut(s) 302, 537, 598, 613
FaiI YATR 6 cut(s) 300, 491, 535, 545, 596, 611
FatI CATG 4 cut(s) 298, 533, 594, 609
FauI CCCGC 1 cut(s) 325
Fnu4HI GCNGC 5 cut(s) 321, 471, 503, 558, 574
FokI GGATG 2 cut(s) 42, 333
Fsp4HI GCNGC 5 cut(s) 321, 471, 503, 558, 574
FspBI CTAG 2 cut(s) 102, 590
GlaI GCGC 1 cut(s) 406
GluI GCNGC 5 cut(s) 321, 471, 503, 558, 574
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 4 cut(s) 161, 297, 316, 608
HgaI GACGC 1 cut(s) 346
HhaI GCGC 1 cut(s) 407
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 4 cut(s) 302, 537, 598, 613
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HpaI GTTAAC 1 cut(s) 516
HphI GGTGA 3 cut(s) 118, 190, 295
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 109, 417, 460
Hpy188III TCNNGA 3 cut(s) 8, 102, 539
Hpy8I GTNNAC 1 cut(s) 516
HpyAV CCTTC 2 cut(s) 129, 339
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 246, 473, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 146, 402
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 4 cut(s) 302, 537, 598, 613
HspAI GCGC 1 cut(s) 405
KasI GGCGCC 1 cut(s) 404
KpnI GGTACC 1 cut(s) 497
KspAI GTTAAC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 52, 104, 112
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 208, 292
LpnPI CCDG 4 cut(s) 298, 536, 552, 567
Lsp1109I GCAGC 5 cut(s) 307, 457, 489, 544, 560
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 102, 590
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 54, 106, 114
MbiI CCGCTC 1 cut(s) 203
MboI GATC 3 cut(s) 52, 104, 112
MboII GAAGA 7 cut(s) 72, 122, 168, 244, 247, 433, 438
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 104, 112
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 1 cut(s) 372
Mly113I GGCGCC 1 cut(s) 405
MmeI TCCRAC 2 cut(s) 206, 260
MnlI CCTC 9 cut(s) 109, 126, 179, 182, 206, 217, 423, 454, 466
MseI TTAA 3 cut(s) 65, 515, 584
MspA1I CMGCKG 3 cut(s) 320, 557, 573
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 137, 146, 402
NarI GGCGCC 1 cut(s) 405
NdeII GATC 3 cut(s) 52, 104, 112
NlaIII CATG 4 cut(s) 302, 537, 598, 613
NlaIV GGNNCC 4 cut(s) 288, 406, 495, 600
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 85
PkrI GCNGC 5 cut(s) 322, 472, 504, 559, 575
PluTI GGCGCC 1 cut(s) 408
PspN4I GGNNCC 4 cut(s) 288, 406, 495, 600
PspPI GGNCC 3 cut(s) 160, 295, 315
PsuI RGATCY 2 cut(s) 104, 112
PvuII CAGCTG 2 cut(s) 557, 573
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 65, 515, 584
SatI GCNGC 5 cut(s) 321, 471, 503, 558, 574
Sau3AI GATC 3 cut(s) 52, 104, 112
Sau96I GGNCC 3 cut(s) 160, 295, 315
SduI GDGCHC 1 cut(s) 386
SetI ASST 9 cut(s) 16, 75, 80, 93, 101, 499, 559, 575, 591
SfaNI GCATC 1 cut(s) 255
SfoI GGCGCC 1 cut(s) 406
SmlI CTYRAG 2 cut(s) 6, 385
SmoI CTYRAG 2 cut(s) 6, 385
Sse9I AATT 1 cut(s) 372
SsiI CCGC 4 cut(s) 129, 201, 318, 368
SspDI GGCGCC 1 cut(s) 404
SspMI CTAG 2 cut(s) 102, 590
StyI CCWWGG 3 cut(s) 156, 435, 497
TaiI ACGT 1 cut(s) 75
TasI AATT 1 cut(s) 372
Tru1I TTAA 3 cut(s) 65, 515, 584
Tru9I TTAA 3 cut(s) 65, 515, 584
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 5 cut(s) 320, 470, 502, 557, 573
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XspI CTAG 2 cut(s) 102, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.