Rroxscaffold_3G00231750

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0022089
Physical Location & Seq
Reverse (-)
17140831 .. 17142433
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231750.1

Sequence Viewer

Length: 315 bp
ATGGCGTTAACAAATTTGGCCAGAGCTCTTCTGGAGGAACCAAGCTCTCCCAGAGCACCCAAAGCCATCTCCCCAATTTTCAAACTCCTCTCTCTGAGCTCTCTTCCCTTTTCCGACTCCATCAACTCCCTAACTCTTCTCTCCACTTCATCCCCAGTCACGAACCCATCTTCCTCTCTCTGCTCCACATCAATAGCCATTTTCATGTCATTCACCAGAACACTCCTGTTCAGATGCTGCTCTGCACAGAGCGGCCACTCCACCATTGGCACCCCGGCTATCACCGATTCTAGCACCGAGTTCCACCCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

104

Amino Acids

10.99

Weight (kDa)

7.77

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34139
pyrus_communis pycom02g12090 pycom02g12130
rosa_roxburghii Rroxscaffold_3G00231750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 252
AciI CCGC 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 18, 253
AcsI RAATTY 1 cut(s) 13
AgsI TTSAA 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 26, 45, 99
AluI AGCT 3 cut(s) 26, 45, 99
Alw21I GWGCWC 3 cut(s) 28, 58, 101
AlwNI CAGNNNCTG 1 cut(s) 237
AoxI GGCC 2 cut(s) 18, 253
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 205, 274
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 28, 101
Bbv12I GWGCWC 3 cut(s) 28, 58, 101
BbvI GCAGC 1 cut(s) 224
BccI CCATC 3 cut(s) 74, 128, 175
BcnI CCSGG 1 cut(s) 275
BfaI CTAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 238, 253
BlsI GCNGC 2 cut(s) 239, 254
Bme1390I CCNGG 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 39, 271
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 2 cut(s) 20, 255
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 3 cut(s) 28, 58, 101
BsiSI CCGG 1 cut(s) 275
BsnI GGCC 2 cut(s) 20, 255
Bsp1286I GDGCHC 3 cut(s) 28, 58, 101
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 20, 255
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 39, 271
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 3 cut(s) 33, 108, 141
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 2 cut(s) 20, 255
BtsCI GGATG 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 237
CviAII CATG 1 cut(s) 205
CviJI RGCY 8 cut(s) 20, 26, 45, 65, 99, 197, 255, 278
CviKI_1 RGCY 8 cut(s) 20, 26, 45, 65, 99, 197, 255, 278
DdeI CTNAG 1 cut(s) 95
EaeI YGGCCR 2 cut(s) 18, 253
Eam1104I CTCTTC 3 cut(s) 33, 108, 141
EarI CTCTTC 3 cut(s) 33, 108, 141
Ecl136II GAGCTC 2 cut(s) 26, 99
Eco24I GRGCYC 2 cut(s) 28, 101
Eco53kI GAGCTC 2 cut(s) 26, 99
EcoICRI GAGCTC 2 cut(s) 26, 99
EcoT38I GRGCYC 2 cut(s) 28, 101
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 238, 253
FokI GGATG 1 cut(s) 136
FriOI GRGCYC 2 cut(s) 28, 101
Fsp4HI GCNGC 2 cut(s) 238, 253
FspBI CTAG 1 cut(s) 291
GluI GCNGC 2 cut(s) 238, 253
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 2 cut(s) 20, 255
HapII CCGG 1 cut(s) 275
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 2 cut(s) 116, 287
HpaI GTTAAC 1 cut(s) 9
HpaII CCGG 1 cut(s) 275
HphI GGTGA 2 cut(s) 205, 274
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 96, 115, 233
Hpy188III TCNNGA 2 cut(s) 32, 160
Hpy8I GTNNAC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 7 cut(s) 17, 34, 64, 168, 229, 239, 288
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 157
MbiI CCGCTC 1 cut(s) 252
MboII GAAGA 4 cut(s) 20, 95, 128, 162
MhlI GDGCHC 3 cut(s) 28, 58, 101
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 2 cut(s) 13, 75
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 28, 98, 184
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 275
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 39, 271
NmuCI GTSAC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 239, 254
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp124BI GAGCTC 2 cut(s) 28, 101
PspN4I GGNNCC 2 cut(s) 39, 271
PstNI CAGNNNCTG 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 203
SacI GAGCTC 2 cut(s) 28, 101
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 238, 253
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 3 cut(s) 28, 58, 101
SetI ASST 3 cut(s) 28, 47, 101
SfaNI GCATC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 2 cut(s) 13, 75
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 2 cut(s) 28, 101
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 312
TasI AATT 2 cut(s) 13, 75
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 138, 193
XapI RAATTY 1 cut(s) 13
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 263
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.